Gene omics information

Query gene ID	1612123_at
Gene name	hypothetical protein LOC100241410
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	79.4	1612123_at	BQ799342	hypothetical protein LOC100241410	-	3e-1	At1g14410	WHY1 (WHIRLY 1)	S.X.	H.G.	Please select
0.69	88.3	1606836_at	CA809479	hypothetical protein LOC100260106	-	1e-20	At3g09770	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.67	87.9	1608031_at	BQ792714	hypothetical protein LOC100253247	-	4e-20	At5g03540	ATEXO70A1 (exocyst subunit EXO70 family protein A1)	S.X.	H.G.	Please select
0.67	87.9	1613034_at	BQ797491	hypothetical protein LOC100248519	-	1e-1	At1g09870	histidine acid phosphatase family protein	S.X.	H.G.	Please select
0.65	85.0	1609101_at	CB921620	hypothetical protein LOC100252214	-	9e-31	At5g34850	PAP26 (PURPLE ACID PHOSPHATASE 26)	S.X.	H.G.	Please select
0.64	84.7	1613313_at	BQ798873	hypothetical protein LOC100245611	-	1e-16	At3g11830	chaperonin, putative	S.X.	H.G.	Please select
0.61	83.2	1612267_at	CF211274	similar to NADP-specific isocitrate dehydrogenase	-	9e-65	At5g14590	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	S.X.	H.G.	Please select
0.58	79.8	1608442_at	AF177590.1	ornithine aminotransferase	-	8e-60	At5g46180	delta-OAT	S.X.	H.G.	Please select
0.56	79.4	1611198_s_at	CF413741	nhx1 antiporter	-	4e-1	At4g12060	Clp amino terminal domain-containing protein	S.X.	H.G.	Please select
0.55	77.3	1612773_at	CF215183	hypothetical protein LOC100264940	-	5e-15	At5g27410	aminotransferase class IV family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.7	99.7	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
8.7	99.5	GSM287881	Green soft berry B10 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
7.9	99.3	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
7.2	99.1	GSM287884	Green soft berry C7 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
6.7	99.0	GSM287871	Green hard berry C4 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
6.3	98.8	GSM287879	Green hard berry C19 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
6.2	98.8	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
6.2	98.8	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
6.0	98.7	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
5.9	98.6	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-1	34	1620226_at	CF372108	hypothetical protein LOC100254018	-	2e-24	At4g33460	ATNAP13	C.G.	S.X.	Please select
0.02	4e-1	34	1608070_at	CF214791	hypothetical protein LOC100245501	-	1e+0	At4g10880	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1622371_at	CF518697	hypothetical protein LOC100267229	-	5e-35	At2g40600	appr-1-p processing enzyme family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1619680_at	CB975224	hypothetical protein LOC100254201	-	2e+0	At3g14480	glycine/proline-rich protein	C.G.	S.X.	Please select
0.03	2e+0	32	1618693_at	CB348122	hypothetical protein LOC100263832	-	9e-32	At5g56500	ATP binding / protein binding	C.G.	S.X.	Please select
0.02	2e+0	32	1616976_at	CF208654	-	-	2e+0	At2g45240	MAP1A (METHIONINE AMINOPEPTIDASE 1A)	C.G.	S.X.	Please select
0.02	2e+0	32	1614537_at	CB919204	hypothetical protein LOC100266511	-	1e-31	At3g06310	NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1612750_at	CA817715	hypothetical protein LOC100248749	-	2e+0	At3g55390	integral membrane family protein	C.G.	S.X.	Please select
0.03	2e+0	32	1612240_at	CF414518	hypothetical protein LOC100263579	-	4e+0	At5g05990	mitochondrial glycoprotein family protein / MAM33 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At1g14410	838003	WHY1 (WHIRLY 1)	Encodes a homolog of the potato p24 protein. Binds single strand telomeric repeats. Negatively regulates telomerase activity and telomere length.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e+0	32	Glycine max	GmaAffx.49036.1.S1_at	BE329599	-	-	6e-8	At2g39090	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	EBem05_SQ003_G09_at	EBem05_SQ003_G09	-	-	2e-1	At4g31020	unknown protein	C.G.	S.X.	Please select
0.02	1e+1	32	Oryza sativa	Os11g0544500	AK071982.1	-	Protein of unknown function UPF0016 family protein	1e-21	At4g13590	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	7e+0	32	Populus trichocarpa	PtpAffx.219367.1.S1_at	pmrna35265	-	-	4e-41	Atmg00980	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e+0	32	Triticum aestivum	TaAffx.110527.1.S1_at	CA658100	-	-	9e-1	At3g43260	-	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	ZmAffx.80.1.A1_at	AI665268	hypothetical protein LOC100278886	-	3e+0	At2g07721	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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