Gene omics information

Query gene ID	1612117_at
Gene name	hypothetical protein LOC100258476
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	91.3	1612117_at	CF212666	hypothetical protein LOC100258476	-	2e-33	At1g01650	aspartic-type endopeptidase/ peptidase	S.X.	H.G.	Please select
0.36	50.7	1608438_at	CB341675	-	-	6e-2	At1g78700	brassinosteroid signalling positive regulator-related	S.X.	H.G.	Please select
0.32	43.1	1606715_at	CB981978	hypothetical protein LOC100260666	-	1e-69	At4g02480	AAA-type ATPase family protein	S.X.	H.G.	Please select
0.27	34.0	1615154_at	CF209662	hypothetical protein LOC100251043	-	8e-6	At3g09085	unknown protein	S.X.	H.G.	Please select
0.15	15.6	1609035_at	BQ796729	hypothetical protein LOC100251284	-	2e-12	At2g40830	RHC1A	S.X.	H.G.	Please select
0.10	10.3	1620463_at	CD013332	hypothetical protein LOC100265246	-	1e+0	At2g27970	CKS2 (CDK-subunit 2)	S.X.	H.G.	Please select
0.10	10.3	1610189_at	CF211002	hypothetical protein LOC100257691	-	4e+0	At5g47830	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.3	97.2	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436356	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	5e-68	256	1607795_at	CF415624	hypothetical protein LOC100241031	-	3e-27	At1g63690	protease-associated (PA) domain-containing protein	C.G.	S.X.	Please select
0.02	4e-1	34	1615458_at	CB969727	hypothetical protein LOC100255664	-	2e+0	At5g16490	RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)	C.G.	S.X.	Please select
0.03	4e-1	34	1614408_at	CB978599	-	-	5e-25	Atcg01130	-	C.G.	S.X.	Please select
0.02	4e-1	34	1608795_at	CF517353	hypothetical LOC100251362	-	2e+0	At3g28857	transcription regulator	C.G.	S.X.	Please select
0.02	2e+0	32	1618393_at	CF516653	hypothetical protein LOC100265397	-	1e-41	At2g32520	dienelactone hydrolase family protein	C.G.	S.X.	Please select
0.03	2e+0	32	1613926_at	CF414344	hypothetical protein LOC100251019	-	3e+0	At5g64400	-	C.G.	S.X.	Please select
0.03	6e+0	30	1621299_at	CF207722	hypothetical protein LOC100260506	-	4e-6	At1g55930	CBS domain-containing protein / transporter associated domain-containing protein	C.G.	S.X.	Please select
0.02	6e+0	30	1619079_s_at	CB008174	hypothetical protein LOC100240809	-	1e-79	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	C.G.	S.X.	Please select
0.02	6e+0	30	1619073_at	CF206347.1	-	-	6e-34	At5g04140	GLU1 (GLUTAMATE SYNTHASE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	2e-33	143	Arabidopsis thaliana	At1g01650	839499	aspartic-type endopeptidase/ peptidase	F:peptidase activity, aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system, integral to membrane;MOPBF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.37	2e-62	240	Glycine max	GmaAffx.77102.1.S1_at	BQ273536	-	-	2e-34	At1g63690	protease-associated (PA) domain-containing protein	C.G.	S.X.	Please select
0.07	1e-2	40	Hordeum vulgare	Contig11156_at	Contig11156	-	-	2e-10	At2g43070	protease-associated (PA) domain-containing protein	C.G.	S.X.	Please select
0.05	1e-8	61	Oryza sativa	Os06g0730900	AK064963.1	-	-	4e-40	At1g63690	protease-associated (PA) domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.45	8e-46	184	Populus trichocarpa	PtpAffx.119076.1.S1_at	CV282296	-	-	4e-19	At1g01650	aspartic-type endopeptidase/ peptidase	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	1e+0	34	Triticum aestivum	Ta.13399.1.S1_a_at	CK195532	-	-	1e-14	At2g43070	protease-associated (PA) domain-containing protein	C.G.	S.X.	Please select
0.14	2e-10	65	Zea mays	Zm.8709.1.A1_at	CF624906	-	-	6e-6	At1g01650	aspartic-type endopeptidase/ peptidase	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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