Gene omics information

Query gene ID	1612066_at
Gene name	beclin 1 protein
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.70	88.6	1612066_at	CF607715	beclin 1 protein	-	5e-48	At3g61710	autophagy protein Apg6 family	S.X.	H.G.	Please select
0.80	93.6	1617936_at	BQ797736	similar to 26S proteasome subunit RPN5b	-	3e-23	At5g64760	RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)	S.X.	H.G.	Please select
0.71	89.5	1617898_at	CF605263	hypothetical protein LOC100244372	-	3e-1	At5g49610	F-box family protein	S.X.	H.G.	Please select
0.63	84.3	1614946_at	CF510992	hypothetical protein LOC100258219	-	8e-64	At4g24820	26S proteasome regulatory subunit, putative (RPN7)	S.X.	H.G.	Please select
0.60	81.9	1609756_at	CF604406	hypothetical protein LOC100263684	-	6e-3	At1g18830	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.59	80.6	1620627_at	CF214379	hypothetical protein LOC100259195	-	1e-22	At1g20110	zinc finger (FYVE type) family protein	S.X.	H.G.	Please select
0.59	80.6	AFFX-Vvi-actin-5_at	-	actin 1	-	0			S.X.	H.G.	Please select
0.53	75.2	1611078_a_at	CF518728	hypothetical protein LOC100260925	-	1e-7	At1g32230	RCD1 (RADICAL-INDUCED CELL DEATH1)	S.X.	H.G.	Please select
0.52	73.9	1616733_s_at	CB981317	hypothetical protein LOC100255975	-	1e-3	At5g56610	dual specificity protein phosphatase family protein	S.X.	H.G.	Please select
0.50	72.7	1614631_at	CB979660	hypothetical protein LOC100254376	-	1e-137	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.8	96.4	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.8	96.4	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM287886	Green soft berry C22 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	36	1621860_at	CB836556	-	-	1e+0	At5g35300	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	36	1613017_s_at	CD003887	hypothetical protein LOC100253859	-	2e-39	At4g26850	VTC2 (vitamin c defective 2)	C.G.	S.X.	Please select
0.02	2e-1	36	1609242_at	CB836556	-	-	1e+0	At5g35300	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	36	1609268_at	CF414192	hypothetical protein LOC100253859	-	2e-39	At4g26850	VTC2 (vitamin c defective 2)	C.G.	S.X.	Please select
0.01	8e-1	34	1620886_at	CB348410	-	-	1e-1	At1g34780	ATAPRL4 (APR-like 4)	C.G.	S.X.	Please select
0.02	8e-1	34	1619607_s_at	CF202338.1	hypothetical protein LOC100242775	-	7e-3	At4g11020	unknown protein	C.G.	S.X.	Please select
0.02	8e-1	34	1617114_at	CF202338.1	-	-	7e-3	At4g11020	unknown protein	C.G.	S.X.	Please select
0.01	8e-1	34	1609873_at	CB341501	hypothetical protein LOC100247523	-	2e-69	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	C.G.	S.X.	Please select
0.01	3e+0	32	1622715_s_at	CA809281	hypothetical protein LOC100246378	-	3e-68	At1g12900	GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.42	5e-48	192	Arabidopsis thaliana	At3g61710	825344	autophagy protein Apg6 family	F:molecular_function unknown;P:autophagy;C:unknown;MOFBPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.42	3e-124	446	Glycine max	Gma.13106.1.S1_at	CD393221	beclin 1 protein	-	1e-60	At3g61710	autophagy protein Apg6 family	C.G.	S.X.	Please select
0.20	2e-14	79	Hordeum vulgare	Contig17488_at	Contig17488	beclin 1 protein	-	1e-4	At3g61710	autophagy protein Apg6 family	C.G.	S.X.	Please select
0.16	4e-19	97	Oryza sativa	Os01g0681400	AK101033.1	-	Autophagy protein Apg6 family protein	5e-6	At3g61710	autophagy protein Apg6 family	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.33	7e-57	222	Populus trichocarpa	Ptp.878.1.S1_at	CV243532	hypothetical protein	-	2e-27	At3g61710	autophagy protein Apg6 family	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.22	2e-16	87	Triticum aestivum	Ta.2772.1.S1_at	AY036610.1	beclin1-like protein	-	1e-6	At3g61710	autophagy protein Apg6 family	C.G.	S.X.	Please select
0.24	6e-18	91	Zea mays	Zm.12996.1.S1_at	CA403013	beclin 1 protein	-	2e-4	At3g61710	autophagy protein Apg6 family	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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