Gene omics information

Query gene ID	1612054_at
Gene name	hypothetical protein LOC100248963
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.92	99.0	1612054_at	CF213303	hypothetical protein LOC100248963	-	3e-25	At1g19650	SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative	S.X.	H.G.	Please select
0.17	18.2	1612995_at	CD012259	-	-	4e-18	At3g13340	WD-40 repeat family protein	S.X.	H.G.	Please select
0.16	16.7	1608869_s_at	CF514065	glyceraldehyde-3-phosphate dehydrogenase	-	4e-41	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	S.X.	H.G.	Please select
0.12	12.1	1616981_at	CB971105	phospholipase D alpha	-	4e-52	At3g15730	PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1)	S.X.	H.G.	Please select
0.11	11.3	1621888_at	CD710781	hypothetical protein LOC100252475	-	4e-1	At5g39570	unknown protein	S.X.	H.G.	Please select
0.10	10.3	1608604_at	BQ796866	hypothetical protein LOC100260136	-	7e-24	At3g05560	60S ribosomal protein L22-2 (RPL22B)	S.X.	H.G.	Please select
0.08	8.5	1615237_at	CB913715	hypothetical protein LOC100246592	-	3e-18	At2g37110	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.5	91.9	GSM436356	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436364	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436361	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436408	V. riparia (VR, PI588259) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM147688	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	17
2.1	89.1	GSM436419	V. riparia (VR, PI588259) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	3e-29	127	1612370_at	CB974818	hypothetical protein LOC100252199	-	1e-46	At4g39170	SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative	C.G.	S.X.	Please select
0.04	7e-2	36	1614528_at	CB973367	hypothetical protein LOC100253189	-	2e-5	At1g15040	glutamine amidotransferase-related	C.G.	S.X.	Please select
0.03	7e-2	36	1610553_at	CA814084	hypothetical protein LOC100263869	-	1e-7	At1g64340	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	34	1620563_at	CD714913	-	-	3e-1	At5g62350	invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22)	C.G.	S.X.	Please select
0.03	3e-1	34	1616797_at	CD714913	-	-	3e-1	At5g62350	invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22)	C.G.	S.X.	Please select
0.03	3e-1	34	1613005_s_at	CB982792	hypothetical protein LOC100265618	-	6e+0	At4g11190	disease resistance-responsive family protein / dirigent family protein	C.G.	S.X.	Please select
0.04	1e+0	32	1617751_s_at	CA813831	hypothetical protein LOC100243312	-	8e-1	At2g22980	serine-type carboxypeptidase	C.G.	S.X.	Please select
0.02	1e+0	32	1617221_s_at	CF212784	hypothetical protein LOC100267236	-	3e-12	At5g60900	RLK1 (RECEPTOR-LIKE PROTEIN KINASE 1)	C.G.	S.X.	Please select
0.02	1e+0	32	1616239_at	CB968908	hypothetical protein LOC100262073	-	2e-6	At5g60900	RLK1 (RECEPTOR-LIKE PROTEIN KINASE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	3e-25	115	Arabidopsis thaliana	At1g19650	838552	SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative	F:phosphatidylinositol transporter activity, transporter activity;P:transport;C:plasma membrane;MPFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.24	7e-24	111	Glycine max	Gma.5017.2.A1_at	BI701531	-	-	1e-21	At4g39170	SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative	C.G.	S.X.	Please select
0.16	3e-8	57	Hordeum vulgare	Contig4378_s_at	Contig4378	-	-	4e-10	At1g19650	SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative	C.G.	S.X.	Please select
0.03	5e-1	36	Oryza sativa	Os11g0623300	9639.m03735	-	-	1e-3	At2g11910	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.27	3e-20	99	Populus trichocarpa	PtpAffx.46673.2.S1_at	CN523834	hypothetical protein	-	2e-9	At1g75370	SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.16	3e-4	46	Triticum aestivum	TaAffx.8969.1.S1_at	CA617206	-	-	2e-1	At2g04690	cellular repressor of E1A-stimulated genes (CREG) family	C.G.	S.X.	Please select
0.12	7e-9	59	Zea mays	Zm.6096.1.A1_at	CF636033	hypothetical protein LOC100273833	-	6e-1	At4g39170	SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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