Gene omics information

Query gene ID	1611994_a_at
Gene name	hypothetical protein LOC100260925
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.39	54.9	1611994_a_at	CF214487	hypothetical protein LOC100260925	-	7e-8	At1g32230	RCD1 (RADICAL-INDUCED CELL DEATH1)	S.X.	H.G.	Please select
0.67	87.9	1614946_at	CF510992	hypothetical protein LOC100258219	-	8e-64	At4g24820	26S proteasome regulatory subunit, putative (RPN7)	S.X.	H.G.	Please select
0.61	83.2	AFFX-Vvi-actin-5_at	-	actin 1	-	0			S.X.	H.G.	Please select
0.60	81.9	1607136_at	CF605014	hypothetical protein LOC100257366	-	4e-28	At4g38630	RPN10 (REGULATORY PARTICLE NON-ATPASE 10)	S.X.	H.G.	Please select
0.59	80.6	1617936_at	BQ797736	similar to 26S proteasome subunit RPN5b	-	3e-23	At5g64760	RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)	S.X.	H.G.	Please select
0.52	73.9	1616733_s_at	CB981317	hypothetical protein LOC100255975	-	1e-3	At5g56610	dual specificity protein phosphatase family protein	S.X.	H.G.	Please select
0.46	66.5	1620627_at	CF214379	hypothetical protein LOC100259195	-	1e-22	At1g20110	zinc finger (FYVE type) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.5	95.7	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.5	95.7	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.5	95.7	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.4	95.5	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.1	94.6	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.60	0	680	1611078_a_at	CF518728	hypothetical protein LOC100260925	-	1e-7	At1g32230	RCD1 (RADICAL-INDUCED CELL DEATH1)	C.G.	S.X.	Please select
0.24	7e-67	252	1618613_at	BQ795651	hypothetical protein LOC100245552	-	6e-7	At2g35510	SRO1 (SIMILAR TO RCD ONE 1)	C.G.	S.X.	Please select
0.03	1e+0	32	1613839_at	CB001705	-	-	2e-14	At1g68990	DNA-directed RNA polymerase, mitochondrial (RPOMT)	C.G.	S.X.	Please select
0.03	1e+0	32	1610046_at	CB001705	hypothetical protein LOC100263361	-	2e-14	At1g68990	DNA-directed RNA polymerase, mitochondrial (RPOMT)	C.G.	S.X.	Please select
0.02	1e+0	32	1609920_at	CD711951	hypothetical protein LOC100264144	-	4e-30	At5g19820	emb2734 (embryo defective 2734)	C.G.	S.X.	Please select
0.02	5e+0	30	1622802_at	CD012590	-	-	1e+0	At5g26170	WRKY50	C.G.	S.X.	Please select
0.02	5e+0	30	1620943_at	CF202855.1	-	-	2e-36	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	C.G.	S.X.	Please select
0.02	5e+0	30	1620728_at	CA818747	hypothetical protein LOC100245878	-	2e+0	At4g14104	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	1620596_at	BQ797727	hypothetical protein LOC100259534	-	5e-174	At5g44340	TUB4	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	7e-8	57	Arabidopsis thaliana	At1g32230	840115	RCD1 (RADICAL-INDUCED CELL DEATH1)	Encodes a protein belonging to the (ADP-ribosyl)transferase domain-containing subfamily of WWE protein-protein interaction domain protein family. Superoxide radicals are necessary and sufficient to propagate cell death or lesion formation in rcd1 mutants. Without stress treatment, RCD1 is localized in the nucleus. Under high salt or oxidative stress, RCD1 is found not only in the nucleus but also in the cytoplasm.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e+0	32	Glycine max	HgAffx.13659.1.S1_at	CB374323	-	-	3e+0	At5g53040	RWP-RK domain-containing protein	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	EBro03_SQ007_M08_at	EBro03_SQ007_M08	-	-	3e+0	At5g16160	unknown protein	C.G.	S.X.	Please select
0.06	2e+0	34	Oryza sativa	Os04g0210700	9632.m01205	-	Conserved hypothetical protein	2e+0	At2g26240	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.26	1e-28	127	Populus trichocarpa	PtpAffx.164014.1.S1_at	AJ777114	hypothetical protein	-	3e-10	At2g35510	SRO1 (SIMILAR TO RCD ONE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	4e+0	32	Triticum aestivum	Ta.26023.1.A1_at	CD454704	-	-	5e+0	At4g39340	unknown protein	C.G.	S.X.	Please select
0.04	2e-3	42	Zea mays	Zm.3821.1.A1_at	CF635078	-	-	1e+0	At4g27950	CRF4 (CYTOKININ RESPONSE FACTOR 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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