Gene omics information

Query gene ID	1611981_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.3	1611981_at	CF403805	-	-	6e-2	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	S.X.	H.G.	Please select
0.55	77.3	1608541_s_at	CF201527.1	hypothetical protein LOC100244953 /// hypothetical protein LOC100267258 /// hypothetical protein LOC100256993	-	2e-2	At1g07450	tropinone reductase, putative / tropine dehydrogenase, putative	S.X.	H.G.	Please select
0.53	75.2	1619056_at	CB917774	hypothetical protein LOC100248590	-	2e-5	At1g11570	nuclear transport factor 2 (NTF2), putative	S.X.	H.G.	Please select
0.32	43.1	1610465_s_at	CB982876	hypothetical LOC100245940	-	2e-13	At5g48880	PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2)	S.X.	H.G.	Please select
0.27	34.0	1615933_at	CF510942	hypothetical protein LOC100241901	-	1e+0	At5g17690	TFL2 (TERMINAL FLOWER 2)	S.X.	H.G.	Please select
0.17	18.2	1618621_s_at	BQ800042	-	-	6e+0	At3g52470	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.0	99.3	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
7.1	99.1	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
6.9	99.1	GSM287893	Pink soft berry C12 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
6.5	98.9	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
6.4	98.9	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
6.3	98.8	GSM287890	Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
6.2	98.8	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
6.1	98.7	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
5.9	98.6	GSM287892	Pink soft berry C11 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.0	98.0	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-2	38	1606638_at	CF518649	hypothetical protein LOC100258699	-	3e-11	At1g51660	ATMKK4 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4)	C.G.	S.X.	Please select
0.04	7e-2	36	1616828_s_at	CD799685	similar to Os03g0670700	-	1e+0	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	C.G.	S.X.	Please select
0.02	7e-2	36	1616036_at	CF513213	hypothetical protein LOC100241363	-	7e-4	At4g23630	BTI1 (VIRB2-INTERACTING PROTEIN 1)	C.G.	S.X.	Please select
0.04	3e-1	34	1621867_at	CF516530	-	-	5e-2	At5g66000	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	34	1615135_at	CD797887	-	-	1e+1	At5g41992	CPuORF58 (Conserved peptide upstream open reading frame 58)	C.G.	S.X.	Please select
0.03	3e-1	34	1614217_at	CK138191.1	hypothetical protein LOC100254189	-	4e+0	Atmg00650	-	C.G.	S.X.	Please select
0.03	3e-1	34	1610429_at	CK138191.1	-	-	4e+0	Atmg00650	-	C.G.	S.X.	Please select
0.03	1e+0	32	1621708_at	CD719628	hypothetical LOC100247368	-	9e-5	At1g73750	-	C.G.	S.X.	Please select
0.03	1e+0	32	1620936_at	CF213485	hypothetical protein LOC100260333	-	2e-2	At1g62510	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e-2	38	Arabidopsis thaliana	At4g13720	827006	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	F:hydrolase activity, pyrophosphatase activity;P:biological_process unknown;C:unknown;BOAMFPV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e-2	40	Glycine max	GmaAffx.90566.1.A1_s_at	CF806291	-	-	2e-1	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	C.G.	S.X.	Please select
0.04	2e-3	42	Hordeum vulgare	EBro03_SQ003_E09_at	EBro03_SQ003_E09	-	-	3e+0	At2g32645	unknown protein	C.G.	S.X.	Please select
0.05	1e-4	48	Oryza sativa	OsAffx.15042.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	9e-2	38	Populus trichocarpa	PtpAffx.205277.1.S1_at	pmrna10463	hypothetical protein	-	3e-23	At1g56090	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	1e-3	44	Triticum aestivum	TaAffx.105847.1.S1_at	CA729032	-	-	3e+0	At4g25250	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.05	2e-3	42	Zea mays	ZmAffx.855.1.S1_at	AI770678	-	-	1e+1	At5g23035	-	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage