CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1611974_at

Gene name hypothetical protein LOC100258926

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 72.7 1611974_at CF208396 hypothetical protein LOC100258926 - 9e-27 At2g15430 NRPB3 S.X. H.G.
0.91 98.8 1609942_at CF210968 hypothetical protein LOC100262467 - 5e+0 At5g67580 TRB2 S.X. H.G.
0.71 89.5 1615411_s_at BQ799375 hypothetical protein LOC100266324 - 3e-4 At1g43130 LCV2 (LIKE COV 2) S.X. H.G.
0.67 87.9 1613621_s_at CD721086 hypothetical protein LOC100246359 - 3e-1 At5g58412 - S.X. H.G.
0.67 87.9 1606807_at BQ794559 hypothetical protein LOC100264697 - 7e-21 At5g11710 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related S.X. H.G.
0.48 68.8 1608155_at CF210980 hypothetical protein LOC100252195 - 1e-31 At4g34460 AGB1 (GTP BINDING PROTEIN BETA 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.4 95.5 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.2 94.9 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM436403 V. riparia (VR, PI588259) LD, 15h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM436363 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436390 V. riparia (VR, PI588259) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436365 Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436372 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436405 V. riparia (VR, PI588259) LD, 15h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436392 V. riparia (VR, PI588259) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 32 1621525_at CB342932 - - 2e-12 At1g67660 DNA binding / nuclease C.G. S.X.
0.02 2e+0 32 1619735_at CF208486 hypothetical protein LOC100258926 - 1e-34 At2g15430 NRPB3 C.G. S.X.
0.02 2e+0 32 1616081_at BQ792921 hypothetical protein LOC100253114 - 6e-81 At1g32930 galactosyltransferase family protein C.G. S.X.
0.03 2e+0 32 1614560_at BQ797670 hypothetical protein LOC100267756 - 3e-10 At1g75180 unknown protein C.G. S.X.
0.01 2e+0 32 1610929_at CA818496 - - 2e-2 At4g21150 HAP6 (HAPLESS 6) C.G. S.X.
0.01 2e+0 32 1607156_at CD801776 hypothetical protein LOC100248126 - 2e-2 At4g21150 HAP6 (HAPLESS 6) C.G. S.X.
0.02 8e+0 30 1622884_at CD719073 - - 3e-1 At5g38080 unknown protein C.G. S.X.
0.02 8e+0 30 1617030_at CF405162 hypothetical protein LOC100268070 - 3e-22 At4g32830 AtAUR1 (ATAURORA1) C.G. S.X.
0.02 8e+0 30 1613253_at CB348716 hypothetical protein LOC100259168 - 2e-15 At5g65860 ankyrin repeat family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.46 9e-27 121 Arabidopsis thaliana At2g15430 816035 NRPB3 Non-catalytic subunit of nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB3 and the E. coli RNA polymerase alpha subunit. A closely related paralog, encoded by At2g15400, can substitute for At2g15430 in the context of Pol V. - - - C.G. S.X.
0.43 4e-54 212 Glycine max Gma.10273.1.S1_at BF597075 - - 2e-5 At2g15430 NRPB3 C.G. S.X.
0.22 2e-35 149 Hordeum vulgare Contig7190_at Contig7190 - - 2e-10 At2g15430 NRPB3 C.G. S.X.
0.32 6e-54 212 Oryza sativa Os09g0110400 AK068844.1 - DNA-directed RNA polymerase II 36 kDa polypeptideA (EC 2.7.7.6) (RNA polymerase II subunit 3) 2e-17 At2g15430 NRPB3 C.G. S.X.
0.46 2e-43 176 Populus trichocarpa PtpAffx.61580.1.S1_at CV244067 hypothetical protein - 8e-53 At2g15400 NRPE3B C.G. S.X.
0.17 4e-35 149 Triticum aestivum Ta.10459.1.S1_at BJ307244 - - 6e-8 At2g15400 NRPE3B C.G. S.X.
0.19 5e-42 171 Zea mays Zm.12589.2.S1_at CK144832 DNA-directed RNA polymerase II 36 kDa polypeptide A - 1e-19 At2g15430 NRPB3 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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