CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1611826_at

Gene name hypothetical protein LOC100262670

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.5 1611826_at CB977629 hypothetical protein LOC100262670 - 2e-9 At4g25500 ATRSP35 S.X. H.G.
0.67 87.9 1610763_at CD714601 hypothetical protein LOC100263330 - 1e+0 At3g48880 F-box family protein S.X. H.G.
0.67 87.9 1617401_at CF210307 hypothetical protein LOC100263342 - 1e-1 At5g66730 zinc finger (C2H2 type) family protein S.X. H.G.
0.46 66.5 1613145_at CF215652 hypothetical protein LOC100255313 - 6e-22 At5g47180 vesicle-associated membrane family protein / VAMP family protein S.X. H.G.
0.44 64.1 1610028_at CB971485 hypothetical protein LOC100265404 - 4e-5 At5g48820 ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE) S.X. H.G.
0.15 15.6 1619851_at CB978591 hypothetical protein LOC100267367 - 2e+0 At4g30880 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.7 96.2 GSM436361 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.3 95.2 GSM436372 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.2 94.9 GSM436427 V. riparia (VR, PI588259) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.2 94.9 GSM436359 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM436358 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM436350 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436360 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436362 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436428 V. riparia (VR, PI588259) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 7e-3 40 1619492_at CK136879.1 - - 5e+0 At5g65410 HB25 (HOMEOBOX PROTEIN 25) C.G. S.X.
0.04 7e-3 40 1616260_at CD710902 similar to splicing factor-like protein - 3e+0 At2g24590 splicing factor, putative C.G. S.X.
0.06 7e-3 40 1615701_at CK136879.1 - - 5e+0 At5g65410 HB25 (HOMEOBOX PROTEIN 25) C.G. S.X.
0.04 7e-3 40 1607063_s_at CD710902 similar to splicing factor-like protein - 3e+0 At2g24590 splicing factor, putative C.G. S.X.
0.02 1e-1 36 1621852_at CF213721 - - 8e-12 At1g16530 ASL9 (ASYMMETRIC LEAVES 2 LIKE 9) C.G. S.X.
0.03 1e-1 36 1619889_at CF207362 - - 2e-2 At1g67195 MIR414 (MICRORNA 414) C.G. S.X.
0.01 1e-1 36 1618545_a_at CB346750 hypothetical LOC100265979 - 2e-50 At1g12270 stress-inducible protein, putative C.G. S.X.
0.01 1e-1 36 1613154_at CB346750 hypothetical LOC100265979 - 2e-50 At1g12270 stress-inducible protein, putative C.G. S.X.
0.02 1e-1 36 1606608_at CF210624 hypothetical protein LOC100255266 - 2e-12 At2g46610 arginine/serine-rich splicing factor, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 2e-9 63 Arabidopsis thaliana At4g25500 828654 ATRSP35 encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. - - - C.G. S.X.
0.10 2e-12 73 Glycine max Gma.17976.1.S1_at BG352133 - - 1e-14 At5g52040 ATRSP41 C.G. S.X.
0.05 4e-5 48 Hordeum vulgare Contig9542_at Contig9542 - - 3e-6 At5g52040 ATRSP41 C.G. S.X.
0.04 7e-4 46 Oryza sativa Os02g0122800 AK121372.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 2e-7 At5g52040 ATRSP41 C.G. S.X.
0.14 9e-18 91 Populus trichocarpa PtpAffx.139439.1.S1_at CX179299 hypothetical protein - 1e-7 At4g25500 ATRSP35 C.G. S.X.
0.07 9e-5 48 Triticum aestivum Ta.4605.3.S1_a_at BJ246787 - - 7e-5 At3g61860 RSP31 C.G. S.X.
0.02 6e-1 34 Zea mays Zm.9842.1.A1_at BM340816 - - 3e-1 At5g20370 serine-rich protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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