Gene omics information

Query gene ID	1611813_s_at
Gene name	hypothetical protein LOC100260422
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1611813_s_at	BQ794797	hypothetical protein LOC100260422	-	1e-6	At5g60460	sec61beta family protein	S.X.	H.G.	Please select
0.61	83.2	1611545_at	CB972050	hypothetical protein LOC100260759	-	2e-14	At1g76200	unknown protein	S.X.	H.G.	Please select
0.60	81.9	1613705_at	CF517167	hypothetical protein LOC100264130	-	4e-27	At1g20200	EMB2719 (EMBRYO DEFECTIVE 2719)	S.X.	H.G.	Please select
0.50	72.7	1620903_at	CF605711	hypothetical protein LOC100260422	-	2e-12	At5g60460	sec61beta family protein	S.X.	H.G.	Please select
0.32	43.1	1608813_s_at	BQ795140	hypothetical protein LOC100255523	-	5e-84	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	S.X.	H.G.	Please select
0.22	25.6	1614112_at	BQ797230	hypothetical protein LOC100252349	-	3e-11	At5g42190	ASK2 (ARABIDOPSIS SKP1-LIKE 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.1	94.6	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436376	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436352	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436374	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436382	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436377	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436373	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436378	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436397	V. riparia (VR, PI588259) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.66	0	632	1620903_at	CF605711	hypothetical protein LOC100260422	-	2e-12	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.02	7e-2	36	1607360_at	CB342405	hypothetical protein LOC100246988	-	2e-47	At1g78510	SPS1 (solanesyl diphosphate synthase 1)	C.G.	S.X.	Please select
0.03	1e+0	32	1618387_at	CF215295	hypothetical protein LOC100249044	-	4e-25	At2g01970	endomembrane protein 70, putative	C.G.	S.X.	Please select
0.01	5e+0	30	1619642_at	CF512453	hypothetical protein LOC100241575	-	3e-28	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select
0.03	5e+0	30	1619512_s_at	CD009782	-	-	1e-3	At5g22060	ATJ2	C.G.	S.X.	Please select
0.03	5e+0	30	1613230_at	CB343417	hypothetical protein LOC100250421	-	1e+0	At1g47820	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	1613038_s_at	CA818530	-	-	2e-3	At5g22060	ATJ2	C.G.	S.X.	Please select
0.02	5e+0	30	1609170_at	CF516552	similar to 40S ribosomal S4 protein	-	3e-110	At5g58420	40S ribosomal protein S4 (RPS4D)	C.G.	S.X.	Please select
0.01	2e+1	28	1622770_at	CF209970	hypothetical protein LOC100259874	-	3e-22	At1g64390	AtGH9C2 (Arabidopsis thaliana glycosyl hydrolase 9C2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	1e-6	54	Arabidopsis thaliana	At5g60460	836167	sec61beta family protein	F:protein transporter activity;P:protein transport;C:plasma membrane;MFPOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	2e-5	50	Glycine max	Gma.5350.1.S1_s_at	AW351218	-	-	6e-18	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.09	3e-8	57	Hordeum vulgare	HZ42D16r_s_at	HZ42D16r	-	-	4e-3	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.08	3e-5	50	Oryza sativa	Os12g0103300	AU222596	-	Protein transport protein SEC61 beta subunit	4e-3	At5g60460	sec61beta family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	2e-9	63	Populus trichocarpa	PtpAffx.18075.1.S1_at	CV278430	-	-	2e-12	At5g60460	sec61beta family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	3e-4	46	Triticum aestivum	Ta.12797.1.S1_at	CA652314	-	-	4e-4	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.08	3e-5	48	Zea mays	Zm.16986.1.S1_at	CF632581	protein transport protein Sec61 beta subunit	-	2e-2	At5g60460	sec61beta family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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