Gene omics information

Query gene ID	1611784_at
Gene name	hypothetical protein LOC100256712
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.3	1611784_at	CB971421	hypothetical protein LOC100256712	-	2e-37	At3g07300	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	S.X.	H.G.	Please select
0.67	87.9	1611994_a_at	CF214487	hypothetical protein LOC100260925	-	7e-8	At1g32230	RCD1 (RADICAL-INDUCED CELL DEATH1)	S.X.	H.G.	Please select
0.50	72.7	1619732_at	CF517983	hypothetical protein LOC100267623	-	5e-15	At5g53000	TAP46 (2A phosphatase associated protein of 46 kD)	S.X.	H.G.	Please select
0.47	67.7	1621533_at	CF514195	hypothetical protein LOC100248579	-	5e-45	At4g01810	protein transport protein-related	S.X.	H.G.	Please select
0.29	37.7	1614249_at	CF603283	similar to AtRPN1a/RPN1A (26S proteasome regulatory subunit S2 1A); binding	-	5e-85	At4g28470	RPN1B (26S PROTEASOME REGULATORY SUBUNIT S2 1B)	S.X.	H.G.	Please select
0.22	25.6	1611182_at	CF512709	hypothetical protein LOC100267624	-	2e-20	At3g03930	protein kinase-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.6	96.0	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM287890	Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM287879	Green hard berry C19 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-2	38	1610738_at	CB976949	hypothetical protein LOC100267811	-	2e-2	At5g27990	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	1622695_at	CF414053	hypothetical protein LOC100267469	-	2e-2	At3g63230	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	1621270_at	CB971990	hypothetical protein LOC100252531	-	4e-4	At5g11590	TINY2 (TINY2)	C.G.	S.X.	Please select
0.02	5e-1	34	1621320_at	CF202272.1	-	-	5e+0	At3g18800	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	1615854_at	CF512129	hypothetical protein LOC100266517	-	3e-1	At5g23950	C2 domain-containing protein	C.G.	S.X.	Please select
0.02	5e-1	34	1614412_s_at	CB971898	hypothetical protein LOC100243985	-	5e-1	At3g17160	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	1613730_at	CB036143	hypothetical protein LOC100264670	-	2e-43	At2g26460	RED family protein	C.G.	S.X.	Please select
0.02	5e-1	34	1609764_at	CB978631	-	-	3e-14	At3g48710	-	C.G.	S.X.	Please select
0.01	5e-1	34	1607291_at	CB007647	hypothetical protein LOC100265661	-	2e-134	At5g52640	ATHSP90.1 (HEAT SHOCK PROTEIN 90.1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	2e-37	157	Arabidopsis thaliana	At3g07300	819918	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	F:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.21	2e-32	141	Glycine max	GmaAffx.31911.1.S1_at	BU546997	-	-	2e-28	At3g07300	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	C.G.	S.X.	Please select
0.05	1e-3	44	Hordeum vulgare	Contig8938_at	Contig8938	-	-	7e-9	At3g07300	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	C.G.	S.X.	Please select
0.13	7e-14	79	Oryza sativa	Os10g0392700	AK068830.1	-	Initiation factor 2B family protein	3e-26	At3g07300	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.32	2e-50	200	Populus trichocarpa	PtpAffx.208577.1.S1_at	pmrna17013	hypothetical protein	-	3e-21	At3g07300	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.17	5e-7	56	Triticum aestivum	Ta.7110.1.S1_at	CD454593	-	-	2e-26	At3g07300	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	C.G.	S.X.	Please select
0.11	1e-11	69	Zea mays	Zm.5426.1.S1_at	BG268286	hypothetical protein LOC100191235	-	3e-24	At3g07300	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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