CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1611783_at

Gene name hypothetical protein LOC100262520

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1611783_at BQ792690 hypothetical protein LOC100262520 - 1e+0 At2g43570 chitinase, putative S.X. H.G.
0.67 87.9 1622174_at CB912233 hypothetical protein LOC100241032 - 5e+0 At4g38090 unknown protein S.X. H.G.
0.67 87.9 1612742_s_at CF372931 hypothetical protein LOC100260825 - 4e-3 At1g51600 TIFY2A S.X. H.G.
0.61 83.2 1622167_at CB007965 hypothetical protein LOC100249144 - 9e-5 At5g23410 - S.X. H.G.
0.55 77.3 1612831_s_at CF201533.1 H+-pyrophosphatase - 5e-9 At1g15690 AVP1 S.X. H.G.
0.40 57.7 1612584_s_at CF211832 similar to putative ankyrin-repeat protein - 5e-39 At4g35450 AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.6 92.5 GSM322368 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.5 91.9 GSM322370 genotype: Incrocio Manzoni - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.3 90.7 GSM147705 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 34
2.2 89.9 GSM147699 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 28
2.2 89.9 GSM322366 genotype: Chardonnay - disease type: Healthy - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.1 89.1 GSM322369 genotype: Incrocio Manzoni - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.0 88.2 GSM147687 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 16
2.0 88.2 GSM147681 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 10
2.0 88.2 GSM147693 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 22
1.9 87.2 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 5e-25 113 1619162_at CF403289 - - 1e-15 At3g54360 protein binding / zinc ion binding C.G. S.X.
0.03 4e-1 34 1622026_at CD720393 - - 3e-1 At5g54840 SGP1 C.G. S.X.
0.03 4e-1 34 1618224_at CD720393 - - 3e-1 At5g54840 SGP1 C.G. S.X.
0.02 4e-1 34 1617199_at CB003856 - - 1e-23 At5g14420 RGLG2 (RING domain Ligase2) C.G. S.X.
0.02 4e-1 34 1613365_at CB003856 hypothetical protein LOC100267987 - 1e-23 At5g14420 RGLG2 (RING domain Ligase2) C.G. S.X.
0.02 2e+0 32 1619005_at CF206493.1 - - 3e-14 At5g46410 NLI interacting factor (NIF) family protein C.G. S.X.
0.03 2e+0 32 1615343_at CB977866 hypothetical LOC100242282 - 2e+0 At1g28200 FIP1 (FH INTERACTING PROTEIN 1) C.G. S.X.
0.02 2e+0 32 1615194_at CF373310 hypothetical protein LOC100256025 - 3e-29 At1g77940 60S ribosomal protein L30 (RPL30B) C.G. S.X.
0.02 2e+0 32 1613466_at CF516633 hypothetical protein LOC100265688 - 2e-13 At1g58030 CAT2 (CATIONIC AMINO ACID TRANSPORTER 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At2g43570 818959 chitinase, putative F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:apoplast, plant-type cell wall;PBFOMV - - - C.G. S.X.
0.06 2e-3 44 Glycine max Gma.12491.1.S1_at CD395584 - - 3e-21 At3g54360 protein binding / zinc ion binding C.G. S.X.
0.03 2e-1 36 Hordeum vulgare Contig24583_at Contig24583 - - 3e-4 At5g51460 ATTPPA C.G. S.X.
0.02 3e+0 34 Oryza sativa Os05g0372200 9633.m02807 - Surfeit locus 6 family protein 5e-1 At5g05210 nucleolar matrix protein-related C.G. S.X.
0.18 9e-24 111 Populus trichocarpa PtpAffx.18870.1.S1_at CK091539 hypothetical protein - 1e-4 At3g54360 protein binding / zinc ion binding C.G. S.X.
0.03 3e-1 36 Triticum aestivum TaAffx.112443.2.S1_at CA627380 - - 4e-28 At3g48930 EMB1080 (embryo defective 1080) C.G. S.X.
0.03 5e-1 34 Zea mays Zm.16806.1.S1_at CF602420 - - 1e+0 At1g36100 myosin heavy chain-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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