CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1611748_s_at

Gene name similar to PDF

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1611748_s_at CB969590 similar to PDF - 1e-1 At2g42840 PDF1 (PROTODERMAL FACTOR 1) S.X. H.G.
0.91 98.8 1607851_at CF415102 hypothetical protein LOC100266538 - 9e-2 At1g04660 glycine-rich protein S.X. H.G.
0.80 93.6 1613074_at CB969590 similar to PDF - 1e-1 At2g42840 PDF1 (PROTODERMAL FACTOR 1) S.X. H.G.
0.80 93.6 1617280_s_at CF373668 hypothetical protein LOC100258720 - 5e-3 At2g27385 unknown protein S.X. H.G.
0.80 93.6 1609418_s_at CF568955 hypothetical protein LOC100246054 /// hypothetical protein LOC100255543 /// hypothetical protein LOC100258516 /// hypothetical protein LOC100261331 /// hypothetical protein LOC100266538 - 4e+0 At5g35375 unknown protein S.X. H.G.
0.61 83.2 1615124_at CF514122 hypothetical protein LOC100258563 - 8e-5 At1g71691 GDSL-motif lipase/hydrolase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.4 97.3 GSM436413 V. riparia (VR, PI588259) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.1 96.9 GSM436396 V. riparia (VR, PI588259) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
4.1 96.9 GSM436400 V. riparia (VR, PI588259) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.0 96.7 GSM436391 V. riparia (VR, PI588259) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.0 96.7 GSM436369 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.9 96.6 GSM436392 V. riparia (VR, PI588259) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.9 96.6 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.9 96.6 GSM436394 V. riparia (VR, PI588259) LD, 15h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.8 96.4 GSM436393 V. riparia (VR, PI588259) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.7 96.2 GSM436397 V. riparia (VR, PI588259) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.94 0 2204 1613074_at CB969590 similar to PDF - 1e-1 At2g42840 PDF1 (PROTODERMAL FACTOR 1) C.G. S.X.
0.02 4e-2 38 1612432_at CA818379 hypothetical protein LOC100261638 - 5e+0 At1g17200 integral membrane family protein C.G. S.X.
0.02 2e-1 36 1609989_at CF415187 - - 2e+1 At4g08190 Ras-related GTP-binding protein, putative C.G. S.X.
0.02 7e-1 34 1622597_at CF212895 hypothetical protein LOC100244242 - 1e-4 At3g43520 unknown protein C.G. S.X.
0.02 7e-1 34 1619784_at CF209299 hypothetical protein LOC100248174 - 2e-9 At5g23450 ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1) C.G. S.X.
0.02 7e-1 34 1619734_at CB971047 - - 4e+0 At5g62290 nucleotide-sensitive chloride conductance regulator (ICln) family protein C.G. S.X.
0.02 7e-1 34 1619319_at CF415639 hypothetical protein LOC100262676 - 4e+0 At4g29160 SNF7.1 C.G. S.X.
0.01 7e-1 34 1618611_at CB971624 hypothetical protein LOC100261588 - 6e-13 At4g37740 AtGRF2 (GROWTHREGULATING FACTOR 2) C.G. S.X.
0.01 7e-1 34 1617668_at CF514659 hypothetical protein LOC100243346 - 5e-4 At4g11080 high mobility group (HMG1/2) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-1 38 Arabidopsis thaliana At2g42840 818884 PDF1 (PROTODERMAL FACTOR 1) Encodes a putative extracellular proline-rich protein is exclusively expressed in the L1 layer of vegetative, inflorescence and floral meristems and the protoderm of organ primordia. - - - C.G. S.X.
0.19 1e-24 115 Glycine max Gma.18014.2.S1_x_at CD393681 - - 2e-3 At2g42840 PDF1 (PROTODERMAL FACTOR 1) C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HVSMEb0011J07r2_at HVSMEb0011J07r2 - - 4e-3 At5g39670 calcium-binding EF hand family protein C.G. S.X.
0.03 2e-2 42 Oryza sativa Os06g0317600 AK120680.1 - Glycine rich family protein 9e-5 At1g61255 - C.G. S.X.
0.24 1e-39 165 Populus trichocarpa PtpAffx.1213.1.S1_a_at CV244506 hypothetical protein - 6e-1 At2g42840 PDF1 (PROTODERMAL FACTOR 1) C.G. S.X.
0.03 2e-1 38 Triticum aestivum TaAffx.52449.1.S1_at CA707573 - - 3e+0 At2g18070 unknown protein C.G. S.X.
0.04 1e-3 44 Zea mays Zm.11602.1.A1_at BM379241 - - 6e+0 At5g60910 AGL8 (agamous-like 8) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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