Gene omics information

Query gene ID	1611698_at
Gene name	hypothetical protein LOC100263780
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	72.7	1611698_at	CA812037	hypothetical protein LOC100263780	-	2e+0	At5g65360	histone H3	S.X.	H.G.	Please select
0.50	72.7	1611343_at	CB974830	hypothetical protein LOC100261168	-	6e+0	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	S.X.	H.G.	Please select
0.43	61.5	1618717_at	CB969401	hypothetical protein LOC100253557	-	7e-19	At3g46220	unknown protein	S.X.	H.G.	Please select
0.23	27.5	1621862_at	CF510931	hypothetical protein LOC100267900	-	2e+0	At1g15930	40S ribosomal protein S12 (RPS12A)	S.X.	H.G.	Please select
0.22	25.6	1614287_at	CF510757	hypothetical protein LOC100243855	-	1e-16	At2g20650	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.13	13.3	1606771_at	CF517362	-	-	3e-39	At4g00660	DEAD/DEAH box helicase, putative	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.4	95.5	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
3.1	94.6	GSM147718	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	47
3.0	94.2	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.8	93.4	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
2.7	93.0	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.4	91.3	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.51	0	785	1621019_at	CF201902.1	-	-	1e+0	At5g65360	histone H3	C.G.	S.X.	Please select
0.01	6e-1	34	1608424_at	CB007996	hypothetical protein LOC100241506	-	1e-11	At2g27285	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1622422_at	CD800947	hypothetical protein LOC100251499	-	2e-21	At1g72990	BGAL17 (beta-galactosidase 17)	C.G.	S.X.	Please select
0.02	2e+0	32	1621884_at	CB007990	-	-	2e+0	At4g32690	GLB3	C.G.	S.X.	Please select
0.02	2e+0	32	1621383_at	CD718971	-	-	9e-8	At2g45070	SEC61 BETA	C.G.	S.X.	Please select
0.01	2e+0	32	1620602_at	BQ796987	hypothetical protein LOC100250131	-	2e-47	At5g01960	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1618914_at	CB972369	-	-	9e-55	At5g10400	histone H3	C.G.	S.X.	Please select
0.02	2e+0	32	1617610_at	CD718971	-	-	9e-8	At2g45070	SEC61 BETA	C.G.	S.X.	Please select
0.02	2e+0	32	1613528_at	CF513262	-	-	1e-6	At5g66920	sks17 (SKU5 Similar 17)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At5g65360	836661	histone H3	F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e+0	34	Glycine max	Gma.12634.1.A1_s_at	CD393348	transcription factor bZIP70	-	7e-1	At1g20280	homeobox-leucine zipper protein-related	C.G.	S.X.	Please select
0.02	6e-2	38	Hordeum vulgare	Contig6892_s_at	Contig6892	-	-	1e+0	At5g19810	proline-rich extensin-like family protein	C.G.	S.X.	Please select
0.01	1e+0	36	Oryza sativa	Os01g0835800	CA762990	-	Conserved hypothetical protein	9e-2	At2g45500	ATP binding / nucleoside-triphosphatase/ nucleotide binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.27	2e-13	77	Populus trichocarpa	PtpAffx.202594.1.S1_at	pmrna5194	hypothetical protein	-	1e+0	At3g12650	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	8e+0	32	Triticum aestivum	TaAffx.135168.7.S1_at	CA622116	-	-	3e+0	At5g43185	Expressed protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zea mays	Zm.19156.1.A1_at	CO527594	-	-	2e+0	At1g12960	60S ribosomal protein L27A (RPL27aA)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage