Gene omics information

Query gene ID	1611638_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	89.5	1611638_at	CB971322	-	-	3e+0	At5g26673	-	S.X.	H.G.	Please select
0.54	75.7	1616780_at	CF415162	hypothetical protein LOC100265405	-	2e-8	At5g60210	-	S.X.	H.G.	Please select
0.53	75.2	1608574_at	CF414345	hypothetical protein LOC100249220	-	6e-2	At3g63095	-	S.X.	H.G.	Please select
0.53	75.2	1614512_at	CF212309	-	-	4e-12	At4g39900	unknown protein	S.X.	H.G.	Please select
0.52	73.9	1615302_at	CF414670	-	-	7e-1	At3g44716	unknown protein	S.X.	H.G.	Please select
0.49	69.3	1612711_at	CD003728	hypothetical protein LOC100261895	-	5e-1	At1g74929	unknown protein	S.X.	H.G.	Please select
0.48	68.8	1620583_s_at	CF213679	hypothetical protein LOC100247041	-	5e-1	At4g24231	unknown protein	S.X.	H.G.	Please select
0.47	67.7	1619869_at	CF513928	hypothetical protein LOC100263034	-	3e-1	At4g20970	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.45	64.6	1617368_at	CF512540	similar to beta-1,3-glucanase	-	1e+0	At2g47110	UBQ6	S.X.	H.G.	Please select
0.44	64.1	1616611_at	CF404283	-	-	2e-1	At2g33220	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.3	99.2	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
7.2	99.1	GSM436415	V. riparia (VR, PI588259) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
6.1	98.7	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
6.0	98.7	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.3	97.2	GSM436355	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.0	96.7	GSM436373	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.8	96.4	GSM436398	V. riparia (VR, PI588259) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.8	96.4	GSM436360	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.8	96.4	GSM436401	V. riparia (VR, PI588259) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM436353	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	34	1621384_at	AY046417.1	proline rich protein 2	-	2e+0	Atmg01250	-	C.G.	S.X.	Please select
0.02	3e-1	34	1611168_at	CF208285	hypothetical protein LOC100247366	-	2e-139	At1g50010	TUA2	C.G.	S.X.	Please select
0.03	3e-1	34	1609094_a_at	CD801602	hypothetical protein LOC100246766	-	1e+0	At1g10455	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	32	1621872_s_at	CB005621	hypothetical protein LOC100265707	-	2e-7	At1g74840	myb family transcription factor	C.G.	S.X.	Please select
0.05	4e+0	30	1619839_s_at	CF514944	hypothetical protein LOC100251001	-	2e-1	At4g25510	unknown protein	C.G.	S.X.	Please select
0.04	4e+0	30	1619637_at	CF203984.1	-	-	4e+0	At5g08420	RNA binding	C.G.	S.X.	Please select
0.03	4e+0	30	1617544_at	CD797813	hypothetical protein LOC100266024	-	2e-9	At1g75500	nodulin MtN21 family protein	C.G.	S.X.	Please select
0.02	4e+0	30	1615773_at	CB973180	hypothetical protein LOC100253658	-	7e-6	At3g45210	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	30	1614952_at	CF211600	-	-	2e+0	At4g32930	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	3e+0	32	Arabidopsis thaliana	At5g26673	5008228	-	Encodes a Plant thionin family protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	1e-9	63	Glycine max	GmaAffx.11200.1.S1_at	CD408980	-	-	2e-1	At3g59870	unknown protein	C.G.	S.X.	Please select
0.04	7e+0	30	Hordeum vulgare	Contig20270_at	Contig20270	-	-	2e+0	At4g28160	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.05	7e+0	32	Oryza sativa	Os06g0361700	9634.m02538	-	-	2e-1	At1g56530	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	1e-15	83	Populus trichocarpa	PtpAffx.225305.1.S1_s_at	pmrna44559	hypothetical protein	-	2e-8	At3g14240	subtilase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	32	Triticum aestivum	TaAffx.70061.25.S1_at	CA604492	-	-	3e+0	At5g44460	calcium-binding protein, putative	C.G.	S.X.	Please select
0.03	6e+0	30	Zea mays	Zm.9599.1.A1_at	BM333574	-	-	2e-1	At1g27330	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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