Gene omics information

Query gene ID	1611483_at
Gene name	hypothetical protein LOC100253154
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	81.9	1611483_at	CF207449	hypothetical protein LOC100253154	-	7e+0	Atmg00320	-	S.X.	H.G.	Please select
0.73	90.8	1615901_at	CF405787	hypothetical protein LOC100248277	-	5e+0	At4g13075	RALFL30 (RALF-LIKE 30)	S.X.	H.G.	Please select
0.67	87.9	1613129_at	CB970410	hypothetical protein LOC100266068	-	2e-13	At4g17330	ATG2484-1	S.X.	H.G.	Please select
0.63	84.3	1614710_at	CF404864	-	-	1e-1	At1g53625	unknown protein	S.X.	H.G.	Please select
0.53	75.2	1615281_at	CD800042	hypothetical protein LOC100241659	-	2e-17	At3g26560	ATP-dependent RNA helicase, putative	S.X.	H.G.	Please select
0.46	66.5	1607726_at	CB349094	hypothetical protein LOC100262331	-	8e-25	At4g34100	protein binding / zinc ion binding	S.X.	H.G.	Please select
0.43	61.5	1617845_at	CD800649	hypothetical protein LOC100263968	-	4e-35	At2g38630	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.4	91.3	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436401	V. riparia (VR, PI588259) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436397	V. riparia (VR, PI588259) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436403	V. riparia (VR, PI588259) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436412	V. riparia (VR, PI588259) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436355	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436407	V. riparia (VR, PI588259) LD, 15h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436393	V. riparia (VR, PI588259) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	36	1613877_at	BQ800323	hypothetical protein LOC100244974	-	1e+0	At5g37680	ATARLA1A (ADP-ribosylation factor-like A1A)	C.G.	S.X.	Please select
0.02	6e-1	34	1621237_at	CF603521	hypothetical protein LOC100246278	-	3e-10	At5g38640	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	C.G.	S.X.	Please select
0.03	6e-1	34	1609492_at	CF207755	hypothetical protein LOC100248221	-	4e+0	At5g43480	unknown protein	C.G.	S.X.	Please select
0.03	6e-1	34	1608172_at	CD799315	-	-	1e-2	At2g18050	HIS1-3 (HISTONE H1-3)	C.G.	S.X.	Please select
0.02	2e+0	32	1622753_at	CB982946	-	-	3e-33	At1g27970	NTF2B (NUCLEAR TRANSPORT FACTOR 2B)	C.G.	S.X.	Please select
0.03	2e+0	32	1621882_at	CD798099	-	-	6e-2	Atcg00680	-	C.G.	S.X.	Please select
0.02	2e+0	32	1621953_s_at	CB982946	hypothetical protein LOC100252245	-	3e-33	At1g27970	NTF2B (NUCLEAR TRANSPORT FACTOR 2B)	C.G.	S.X.	Please select
0.02	2e+0	32	1616395_at	CF517518	-	-	2e-2	At3g15820	phosphatidic acid phosphatase-related / PAP2-related	C.G.	S.X.	Please select
0.02	2e+0	32	1615277_at	CF201654.1	-	-	4e-31	At1g27970	NTF2B (NUCLEAR TRANSPORT FACTOR 2B)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e+0	32	Arabidopsis thaliana	Atmg00320	-	-	hypothetical protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e-3	44	Glycine max	GmaAffx.70227.1.S1_at	BI424642	-	-	7e+0	Atmg00610	-	C.G.	S.X.	Please select
0.03	4e+0	32	Hordeum vulgare	HT09J04u_x_at	HT09J04u	-	-	6e+0	At2g16016	unknown protein	C.G.	S.X.	Please select
0.03	4e+0	34	Oryza sativa	Os12g0228200	9640.m01216	-	-	8e-1	At4g39630	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-9	63	Populus trichocarpa	PtpAffx.216540.1.S1_at	pmrna31382	hypothetical protein	-	2e-26	At3g14400	UBP25 (UBIQUITIN-SPECIFIC PROTEASE 25)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	8e+0	32	Triticum aestivum	Ta.6027.3.S1_a_at	CA640578	-	-	2e-1	At1g70030	paired amphipathic helix repeat-containing protein	C.G.	S.X.	Please select
0.03	8e-1	34	Zea mays	ZmAffx.183.1.A1_at	AI668346	-	-	3e+0	At5g57510	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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