Gene omics information

Query gene ID	1611481_s_at
Gene name	hypothetical protein LOC100254523
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	84.3	1611481_s_at	BQ796815	hypothetical protein LOC100254523	-	2e+0	At3g12490	cysteine protease inhibitor, putative / cystatin, putative	S.X.	H.G.	Please select
0.50	72.7	1619901_at	BQ794318	hypothetical protein LOC100258001	-	4e+0	At5g42410	auxin-responsive family protein	S.X.	H.G.	Please select
0.48	68.8	1606519_at	CB342417	hypothetical protein LOC100261732	-	2e-22	At5g56950	NAP1	S.X.	H.G.	Please select
0.44	64.1	1620143_at	BQ794466	hypothetical protein LOC100248167	-	1e+0	At4g03290	calcium-binding protein, putative	S.X.	H.G.	Please select
0.42	60.1	1617378_at	CB978610	hypothetical protein LOC100265457	-	7e-43	At5g13780	GCN5-related N-acetyltransferase, putative	S.X.	H.G.	Please select
0.36	50.7	1609775_at	BQ797173	similar to Os11g0123400	-	8e-18	At2g38670	PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1)	S.X.	H.G.	Please select
0.36	50.7	1616871_at	CF404278	hypothetical protein LOC100253007 /// similar to putative dihydrolipoamide succinyltransferase	-	3e-26	At4g26910	2-oxoacid dehydrogenase family protein	S.X.	H.G.	Please select
0.33	45.7	1613194_at	CF213913	hypothetical protein LOC100258632	-	4e-23	At5g42000	ORMDL family protein	S.X.	H.G.	Please select
0.33	45.7	1620819_at	BQ797308	hypothetical protein LOC100244100	-	1e-135	At1g54270	EIF4A-2	S.X.	H.G.	Please select
0.25	30.5	1622212_at	BQ798158	hypothetical protein LOC100250769	-	3e-54	At2g46280	TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.3	95.2	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.0	94.2	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM287896	Pink soft berry C27 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM287884	Green soft berry C7 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM287893	Pink soft berry C12 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM287890	Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	34	1619499_at	CF208527	hypothetical protein LOC100243214	-	1e-4	At5g58220	TTL (Transthyretin-Like protein)	C.G.	S.X.	Please select
0.03	5e-1	34	1609019_at	CB973371	similar to predicted protein	-	2e-1	At3g61250	AtMYB17 (myb domain protein 17)	C.G.	S.X.	Please select
0.01	2e+0	32	1619989_s_at	BQ792762	similar to ADP,ATP carrier protein, mitochondrial	-	1e-172	At3g08580	AAC1 (ADP/ATP CARRIER 1)	C.G.	S.X.	Please select
0.02	2e+0	32	1616203_at	CB343761	hypothetical protein LOC100248931	-	1e+0	At1g76940	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.02	2e+0	32	1614871_s_at	CF404051	hypothetical protein LOC100266189	-	7e-5	At4g32551	LUG (LEUNIG)	C.G.	S.X.	Please select
0.02	2e+0	32	1612342_at	CF207490	-	-	4e+0	At5g15802	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1612201_at	CF404051	hypothetical protein LOC100266189	-	7e-5	At4g32551	LUG (LEUNIG)	C.G.	S.X.	Please select
0.02	2e+0	32	1608639_at	CF514898	hypothetical protein LOC100268115	-	8e-3	At5g62165	AGL42 (AGAMOUS LIKE 42)	C.G.	S.X.	Please select
0.02	2e+0	32	1606658_at	CB981496	hypothetical protein LOC100242421 /// hypothetical protein LOC100249803	-	5e-26	At2g22870	EMB2001 (embryo defective 2001)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At3g12490	820428	cysteine protease inhibitor, putative / cystatin, putative	Encodes a protein with cysteine proteinase inhibitor activity. Overexpression increases tolerance to abiotic stressors (i.e.salt,osmitic, cold stress).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	1e-7	57	Glycine max	Gma.5800.1.S1_at	BQ743165	-	-	5e-1	At1g71780	unknown protein	C.G.	S.X.	Please select
0.03	2e-4	46	Hordeum vulgare	Contig14647_at	Contig14647	-	-	4e-2	At3g24506	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	38	Oryza sativa	Os.51277.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	3e-24	113	Populus trichocarpa	PtpAffx.40412.1.S1_at	CV242124	hypothetical protein	-	8e+0	At5g64810	WRKY51	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	Ta.11976.1.S1_at	CN012159	-	-	1e+0	At5g16650	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.03	7e-1	34	Zea mays	Zm.4378.1.A1_at	CK370715	hypothetical protein LOC100194381	-	1e+0	At1g06475	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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