CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1611457_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1611457_at CD711959 - - 1e+0 At2g01275 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.91 98.8 1618296_s_at CD711959 - - 1e+0 At2g01275 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.91 98.8 1615798_at AB073013.1 - - 1e-5 At1g66370 MYB113 (myb domain protein 113) S.X. H.G.
0.91 98.8 1617756_at CB981493 hypothetical protein LOC100253194 - 2e+1 At5g57560 TCH4 (Touch 4) S.X. H.G.
0.83 94.6 1620959_s_at CB915151 myb-relared transcription factor VvMYBA2 - 4e+0 At5g19855 unknown protein S.X. H.G.
0.67 87.9 1610071_at BQ797708 hypothetical protein LOC100253046 - 2e-4 At1g65680 ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
31.5 100.0 GSM287900 Red soft berry C15 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
23.6 100.0 GSM287897 Red soft berry C29 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
22.8 100.0 GSM287904 Red soft berry C31 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
18.8 99.9 GSM287901 Red soft berry C16 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
18.4 99.9 GSM287898 Red soft berry B14 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
17.9 99.9 GSM287902 Red soft berry C30 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
12.0 99.8 GSM287896 Pink soft berry C27 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
9.2 99.5 GSM287899 Red soft berry C13 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
8.8 99.5 GSM287903 Red soft berry A7 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
8.4 99.4 GSM287889 Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.94 0 948 1618296_s_at CD711959 - - 1e+0 At2g01275 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 6e-3 40 1615386_at CB982726 - - 5e+0 At1g75940 ATA27 C.G. S.X.
0.03 2e-2 38 1613729_at CB918682 hypothetical protein LOC100251530 - 1e-25 At1g79850 RPS17 (RIBOSOMAL PROTEIN S17) C.G. S.X.
0.03 2e-2 38 1607574_at BQ796419 hypothetical protein LOC100257066 - 3e-1 At2g28605 - C.G. S.X.
0.03 9e-2 36 1616937_at CF201099.1 hypothetical protein LOC100257035 - 1e+0 At2g24765 ARF3 (ADP-RIBOSYLATION FACTOR 3) C.G. S.X.
0.03 3e-1 34 1621972_s_at CF203227.1 hypothetical protein LOC100266414 - 2e-1 Atmg00910 - C.G. S.X.
0.04 3e-1 34 1621258_at CB971625 hypothetical protein LOC100245237 - 1e-9 At1g15200 protein-protein interaction regulator family protein C.G. S.X.
0.03 3e-1 34 1619350_at CB838046 - - 5e+0 At5g06430 thioredoxin-related C.G. S.X.
0.03 3e-1 34 1615558_at BQ796963 hypothetical protein LOC100266414 - 4e-3 At3g18820 ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At2g01275 814655 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVB - - - C.G. S.X.
0.04 2e+0 34 Glycine max GmaAffx.61149.1.S1_at BU091627 - - 3e-1 At4g13180 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.03 6e-1 34 Hordeum vulgare bags16h04_at bags16h04 - - 9e-5 At3g05400 sugar transporter, putative C.G. S.X.
0.10 4e-5 50 Oryza sativa OsAffx.31649.1.S1_at - - - 0 C.G. S.X.
0.12 4e-1 36 Populus trichocarpa PtpAffx.207039.1.S1_at pmrna13949 hypothetical protein - 2e-4 At3g58850 PAR2 (PHY RAPIDLY REGULATED 2) C.G. S.X.
0.04 5e+0 32 Triticum aestivum Ta.5782.1.S1_at BJ289578 - - 4e+0 At1g10550 XTH33 C.G. S.X.
0.04 1e-1 36 Zea mays Zm.6657.1.A1_at BM382361 Respiratory burst oxidase-like protein D - 3e-15 At5g07390 ATRBOHA (respiratory burst oxidase homolog A) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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