CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1611444_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.82 93.9 1611444_at CF211599 - - 2e-1 At2g40310 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein S.X. H.G.
0.43 61.5 1621364_s_at CF511664 hypothetical protein LOC100252604 - 2e-12 At2g24940 AtMAPR2 (Arabidopsis thaliana membrane-associated progesterone binding protein 2) S.X. H.G.
0.40 57.7 1618651_at CB005890 hypothetical protein LOC100241531 - 5e-13 At5g52960 unknown protein S.X. H.G.
0.36 50.7 1620421_at BQ797148 hypothetical protein LOC100255218 - 4e-31 At1g50480 THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE) S.X. H.G.
0.27 34.0 1606673_at CB005473 hypothetical protein LOC100253524 - 1e-13 At3g10620 ATNUDX26 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 26) S.X. H.G.
0.27 34.0 1611610_at CA818638 hypothetical protein LOC100246037 - 8e-22 At3g17240 mtLPD2 (LIPOAMIDE DEHYDROGENASE 2) S.X. H.G.
0.06 6.8 1607084_at CF413859 - - 3e-7 At1g06515 unknown protein S.X. H.G.
0.06 6.8 1615231_at CF607773 hypothetical protein LOC100254995 - 1e-19 At2g31680 AtRABA5d (Arabidopsis Rab GTPase homolog A5d) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.7 97.7 GSM147678 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 7
3.8 96.4 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.8 96.4 GSM322370 genotype: Incrocio Manzoni - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.7 96.2 GSM147687 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 16
3.6 96.0 GSM147696 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation 25
3.5 95.7 GSM147720 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 49
3.3 95.2 GSM147681 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 10
3.3 95.2 GSM147699 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 28
3.1 94.6 GSM147694 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation 23
2.6 92.5 GSM147672 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 7e-1 32 1617776_at CF512941 - - 1e+0 At5g23440 FTRA1 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 1) C.G. S.X.
0.02 3e+0 30 1622707_at CB009431 - - 1e-2 At1g65140 ubiquitin thiolesterase C.G. S.X.
0.02 3e+0 30 1620932_at CA817618 hypothetical protein LOC100259549 - 8e-28 At5g26980 SYP41 (SYNTAXIN OF PLANTS 41) C.G. S.X.
0.02 3e+0 30 1616823_at CF608764 hypothetical protein LOC100257426 - 6e-7 At3g21175 ZML1 (ZIM-LIKE 1) C.G. S.X.
0.02 3e+0 30 1610040_at CB009431 - - 1e-2 At1g65140 ubiquitin thiolesterase C.G. S.X.
0.03 1e+1 28 1622884_at CD719073 - - 3e-1 At5g38080 unknown protein C.G. S.X.
0.01 1e+1 28 1622575_s_at CF512405 hypothetical protein LOC100245923 - 2e-44 At3g06483 PDK (PYRUVATE DEHYDROGENASE KINASE) C.G. S.X.
0.03 1e+1 28 1622538_at CF210831 hypothetical protein LOC100263811 - 1e+0 At2g07110 - C.G. S.X.
0.03 1e+1 28 1622324_at CF568845 - - 1e-61 At5g61790 calnexin 1 (CNX1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-1 36 Arabidopsis thaliana At2g40310 818623 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA - - - C.G. S.X.
0.04 1e+1 30 Glycine max HgAffx.12857.1.S1_at CB375125 - - 3e+0 At5g40460 unknown protein C.G. S.X.
0.06 5e+0 30 Hordeum vulgare HVSMEb0006I12r2_s_at HVSMEb0006I12r2 - - 3e-1 At5g65080 MAF5 (MADS AFFECTING FLOWERING 5) C.G. S.X.
0.04 5e+0 32 Oryza sativa Os.12267.2.S1_s_at - - - 0 C.G. S.X.
0.04 9e-1 34 Populus trichocarpa PtpAffx.127783.1.A1_at CV244259 - - 5e+0 At5g54300 unknown protein C.G. S.X.
0.04 3e+0 32 Triticum aestivum TaAffx.110795.1.S1_at CA654297 - - 2e-1 At5g26330 plastocyanin-like domain-containing protein / mavicyanin, putative C.G. S.X.
0.04 2e+1 28 Zea mays ZmAffx.813.1.A1_at AI770422 - - 2e-1 At3g49570 LSU3 (RESPONSE TO LOW SULFUR 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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