CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1611378_at

Gene name hypothetical protein LOC100244478

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 81.9 1611378_at CF606069 hypothetical protein LOC100244478 - 2e-8 At1g60630 leucine-rich repeat family protein S.X. H.G.
0.91 98.8 1610683_at CF214265 hypothetical protein LOC100264093 - 2e-6 At5g67260 CYCD3 S.X. H.G.
0.67 87.9 1620766_at CF609305 hypothetical protein LOC100249220 - 9e-18 At1g23000 heavy-metal-associated domain-containing protein S.X. H.G.
0.67 87.9 1606471_at CF372161 hypothetical protein LOC100244589 - 3e-6 At5g07030 aspartic-type endopeptidase S.X. H.G.
0.59 80.6 1617440_at CF373136 hypothetical protein LOC100247017 - 8e-2 At5g61470 zinc finger (C2H2 type) family protein S.X. H.G.
0.55 77.3 1618871_at CF510551 hypothetical protein LOC100265907 - 3e-7 At4g38660 thaumatin, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.5 98.9 GSM436397 V. riparia (VR, PI588259) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
6.4 98.9 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
5.8 98.6 GSM436412 V. riparia (VR, PI588259) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
5.3 98.2 GSM436388 V. riparia (VR, PI588259) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.4 97.3 GSM436400 V. riparia (VR, PI588259) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.8 96.4 GSM436391 V. riparia (VR, PI588259) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.8 96.4 GSM436401 V. riparia (VR, PI588259) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.7 96.2 GSM436398 V. riparia (VR, PI588259) LD, 15h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.6 96.0 GSM436402 V. riparia (VR, PI588259) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM436390 V. riparia (VR, PI588259) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1342 1615153_at CD715305 - - 2e-8 At1g60630 leucine-rich repeat family protein C.G. S.X.
0.03 4e-4 44 1610359_at CB971752 hypothetical protein LOC100265601 - 8e-31 At3g56050 protein kinase family protein C.G. S.X.
0.03 3e-2 38 1611430_at CB975310 - - 4e+0 At3g52790 peptidoglycan-binding LysM domain-containing protein C.G. S.X.
0.03 1e-1 36 1616239_at CB968908 hypothetical protein LOC100262073 - 2e-6 At5g60900 RLK1 (RECEPTOR-LIKE PROTEIN KINASE 1) C.G. S.X.
0.02 1e-1 36 1607220_at CF513372 hypothetical protein LOC100244846 - 4e-48 At5g01850 protein kinase, putative C.G. S.X.
0.02 4e-1 34 1616347_at CF212196 hypothetical protein LOC100257625 - 2e-34 At2g24360 serine/threonine/tyrosine kinase, putative C.G. S.X.
0.03 4e-1 34 1609640_at CF513267 hypothetical protein LOC100244109 - 7e-24 At5g11340 GCN5-related N-acetyltransferase (GNAT) family protein C.G. S.X.
0.02 4e-1 34 1608103_at CD801640 hypothetical protein LOC100266523 - 3e-61 At2g47060 serine/threonine protein kinase, putative C.G. S.X.
0.03 2e+0 32 1619530_at CF568823 - - 2e-26 At5g58300 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 2e-8 59 Arabidopsis thaliana At1g60630 842357 leucine-rich repeat family protein F:protein kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA - - - C.G. S.X.
0.28 6e-16 85 Glycine max Gma.16642.1.S1_at BU551193 - - 2e-10 At1g10850 ATP binding / protein binding / protein kinase/ protein serine/threonine kinase C.G. S.X.
0.03 2e-1 36 Hordeum vulgare Contig18208_at Contig18208 - - 2e-8 At2g26730 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.04 7e-4 46 Oryza sativa Os01g0365000 9629.m02555 - - 3e-3 At1g79670 RFO1 (RESISTANCE TO FUSARIUM OXYSPORUM 1) C.G. S.X.
0.28 1e-63 244 Populus trichocarpa PtpAffx.208822.1.S1_at pmrna17492 hypothetical protein - 3e-13 At1g60630 leucine-rich repeat family protein C.G. S.X.
0.04 1e-3 44 Triticum aestivum Ta.27455.1.A1_at CA743531 - - 3e-5 At4g23230 protein kinase family protein C.G. S.X.
0.03 1e-1 36 Zea mays Zm.11939.1.A1_at CF624620 - - 7e-21 At3g14350 SRF7 (STRUBBELIG-RECEPTOR FAMILY 7) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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