CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1611343_at

Gene name hypothetical protein LOC100261168

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 77.3 1611343_at CB974830 hypothetical protein LOC100261168 - 6e+0 At3g15210 ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4) S.X. H.G.
0.73 90.8 1613361_s_at CF211823 hypothetical protein LOC100242707 - 4e-2 At5g55750 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.60 81.9 1608358_at CD004170 hypothetical protein LOC100266977 - 9e-27 At4g27585 band 7 family protein S.X. H.G.
0.46 66.5 1606771_at CF517362 - - 3e-39 At4g00660 DEAD/DEAH box helicase, putative S.X. H.G.
0.44 64.1 1615039_s_at CB342774 hypothetical protein LOC100251448 - 2e-90 At3g22110 PAC1 S.X. H.G.
0.31 41.3 1618548_at CD798160 hypothetical protein LOC100246661 - 2e-20 At2g06990 HEN2 (hua enhancer 2) S.X. H.G.
0.29 37.7 1622482_at CF414260 hypothetical protein LOC100265772 - 3e-11 At1g76940 RNA recognition motif (RRM)-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.9 96.6 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
3.2 94.9 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
2.8 93.4 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70
2.5 91.9 GSM147729 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 58
2.4 91.3 GSM147718 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 47
2.3 90.7 GSM147734 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 63
2.3 90.7 GSM147719 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 48
2.2 89.9 GSM147715 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 44
2.2 89.9 GSM147743 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 72
2.2 89.9 GSM147711 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 40
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 36 1620636_at CD007995 - - 4e-25 At4g00090 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.03 1e-1 36 1616875_at CD007995 - - 4e-25 At4g00090 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.02 1e-1 36 1615943_at CB971749 hypothetical protein LOC100266273 - 5e-14 At1g51980 mitochondrial processing peptidase alpha subunit, putative C.G. S.X.
0.02 2e+0 32 1622083_at BQ797832 hypothetical protein LOC100265922 - 5e-6 At4g34430 CHB3 C.G. S.X.
0.02 2e+0 32 1619198_at CB983158 hypothetical protein LOC100257864 - 3e+0 At4g26790 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.02 2e+0 32 1614308_at CF211114 hypothetical protein LOC100265443 - 2e-37 At5g48470 unknown protein C.G. S.X.
0.03 2e+0 32 1607985_at CF604037 hypothetical protein LOC100259128 - 2e-5 At2g35720 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.02 7e+0 30 1620719_at CD011034 - - 3e-1 At4g19840 ATPP2-A1 C.G. S.X.
0.03 7e+0 30 1620392_at CF515457 hypothetical protein LOC100262927 - 2e-2 At1g30540 ATPase, BadF/BadG/BcrA/BcrD-type family C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e+0 32 Arabidopsis thaliana At3g15210 820752 ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4) Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-4). The protein contains one AP2 domain. Acts as a negative regulator of JA-responsive defense gene expression and resistance to the necrotrophic fungal pathogen Fusarium oxysporum and antagonizes JA inhibition of root elongation. - - - C.G. S.X.
0.21 6e-19 95 Glycine max GmaAffx.51562.1.S1_at BE822242 - - 4e-1 At5g67390 unknown protein C.G. S.X.
0.22 4e-33 141 Hordeum vulgare Contig23071_at Contig23071 - - 2e+0 At1g13195 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.09 6e-23 109 Oryza sativa Os05g0299300 AK111812.1 - WD40-like domain containing protein 4e-1 At1g13950 ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) C.G. S.X.
0.36 8e-40 165 Populus trichocarpa PtpAffx.13315.1.S1_at CX173115 - - 1e+0 At2g18000 TAF14 (TBP-associated factor 14) C.G. S.X.
0.17 3e-32 139 Triticum aestivum Ta.28840.1.S1_at BJ209156 - - 7e-1 At2g35790 unknown protein C.G. S.X.
0.03 6e-1 34 Zea mays Zm.7056.12.S1_at AI746152 - - 2e-1 At5g39740 60S ribosomal protein L5 (RPL5B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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