CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1611308_at

Gene name hypothetical protein LOC100248182

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.9 1611308_at CF202925.1 hypothetical protein LOC100248182 - 6e-4 At3g47810 MAG1 (MAIGO 1) S.X. H.G.
0.80 93.6 1616425_at CF208709 hypothetical protein LOC100260616 - 5e-7 At2g32730 26S proteasome regulatory subunit, putative S.X. H.G.
0.71 89.5 1619577_at CF213082 hypothetical protein LOC100266782 - 1e+0 At4g28950 ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) S.X. H.G.
0.67 87.9 1617343_s_at CB972670 - - 4e+0 At5g65870 ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR) S.X. H.G.
0.67 87.9 1606938_at CD802354 hypothetical protein LOC100265256 - 4e-72 At1g52740 HTA9 (HISTONE H2A PROTEIN 9) S.X. H.G.
0.67 87.9 1617631_at CD798963 hypothetical protein LOC100264042 - 8e-9 At2g42210 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein S.X. H.G.
0.61 83.2 1620509_at CF213694 hypothetical protein LOC100248585 - 2e-21 At4g39220 ATRER1A S.X. H.G.
0.60 81.9 1618016_at CB350120 hypothetical protein LOC100247325 - 3e-1 At5g35740 glycosyl hydrolase family protein 17 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.7 97.7 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
4.5 97.5 GSM147726 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 55
3.9 96.6 GSM147723 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 52
3.8 96.4 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
3.7 96.2 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
3.7 96.2 GSM147730 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 59
3.6 96.0 GSM147711 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 40
3.5 95.7 GSM147716 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 45
3.5 95.7 GSM147727 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 56
3.4 95.5 GSM147739 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 68
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 4e-18 89 1610551_at CF373106 - - 3e-27 At3g47810 MAG1 (MAIGO 1) C.G. S.X.
0.03 5e-2 36 1610737_at CB346253 hypothetical protein LOC100255417 - 7e-49 At5g26360 chaperonin, putative C.G. S.X.
0.03 2e-1 34 1612801_at BQ796403 hypothetical protein LOC100254774 - 1e-13 At5g06560 unknown protein C.G. S.X.
0.05 2e-1 34 1611053_at CF405013 - - 1e-15 At5g28540 BIP1 C.G. S.X.
0.03 7e-1 32 1621381_at CB001363 - - 7e+0 At5g17350 unknown protein C.G. S.X.
0.03 7e-1 32 1616990_s_at CA817328 hypothetical protein LOC100249830 - 8e-5 At3g18280 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.02 7e-1 32 1612995_at CD012259 - - 4e-18 At3g13340 WD-40 repeat family protein C.G. S.X.
0.04 7e-1 32 1612701_at CF517066 hypothetical protein LOC100252456 - 4e-71 At5g64940 ATATH13 C.G. S.X.
0.02 7e-1 32 1610359_at CB971752 hypothetical protein LOC100265601 - 8e-31 At3g56050 protein kinase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 6e-4 44 Arabidopsis thaliana At3g47810 823935 MAG1 (MAIGO 1) Homolog of yeast retromer subunit VPS29. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. - - - C.G. S.X.
0.16 8e-29 127 Glycine max Gma.1916.1.S1_at AW185983 - - 1e-35 At3g47810 MAG1 (MAIGO 1) C.G. S.X.
0.17 2e-17 87 Hordeum vulgare Contig1352_at Contig1352 - - 6e-7 At3g47810 MAG1 (MAIGO 1) C.G. S.X.
0.05 1e+0 34 Oryza sativa Os02g0265400 AK060027.1 - Vacuolar protein sorting 29 (Vesicle proteinsorting 29) (hVPS29) (MDS007) (PEP11) (DC7/DC15). Spliceisoform 2 2e-25 At3g47810 MAG1 (MAIGO 1) C.G. S.X.
0.16 3e-25 115 Populus trichocarpa PtpAffx.5770.1.S1_s_at CV280704 hypothetical protein - 3e-45 At3g47810 MAG1 (MAIGO 1) C.G. S.X.
0.19 5e-14 77 Triticum aestivum Ta.28571.1.S1_s_at CA639817 - - 8e-5 At3g47810 MAG1 (MAIGO 1) C.G. S.X.
0.14 1e-6 52 Zea mays Zm.8987.1.A1_a_at CK347996 hypothetical protein LOC100192764 /// vacuolar protein sorting 29 - 3e-15 At3g47810 MAG1 (MAIGO 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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