Gene omics information

Query gene ID	1611306_at
Gene name	hypothetical protein LOC100245465
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	81.9	1611306_at	CB972831	hypothetical protein LOC100245465	-	2e-6	At5g04630	CYP77A9	S.X.	H.G.	Please select
0.53	75.2	1619614_at	CF372273	hypothetical protein LOC100249831	-	2e-36	At3g14350	SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)	S.X.	H.G.	Please select
0.50	72.7	1613022_s_at	CF569215.1	hypothetical protein LOC100261985	-	3e+0	At5g28310	oxidoreductase-related	S.X.	H.G.	Please select
0.46	66.5	1622416_at	CF518913	hypothetical protein LOC100261985	-	9e-2	At5g01870	lipid transfer protein, putative	S.X.	H.G.	Please select
0.44	64.1	1610279_s_at	CF415234	hypothetical protein LOC100261504	-	2e-12	At5g19290	esterase/lipase/thioesterase family protein	S.X.	H.G.	Please select
0.21	24.0	1606646_at	CA812296	hypothetical protein LOC100264115	-	2e-23	At5g09870	CESA5 (CELLULOSE SYNTHASE 5)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.5	97.5	GSM436397	V. riparia (VR, PI588259) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM436402	V. riparia (VR, PI588259) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.5	95.7	GSM436400	V. riparia (VR, PI588259) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436359	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436399	V. riparia (VR, PI588259) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436398	V. riparia (VR, PI588259) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436405	V. riparia (VR, PI588259) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436362	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436393	V. riparia (VR, PI588259) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-2	38	1612082_s_at	CA809246	hypothetical protein LOC100258857	-	3e-17	At5g19450	CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19)	C.G.	S.X.	Please select
0.02	2e+0	32	1622195_at	CB969266	hypothetical protein LOC100248937	-	3e-15	At4g07990	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.02	2e+0	32	1611987_at	CF204026.1	-	-	1e-1	At5g49260	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	1609940_at	CF514063	-	-	2e-2	At4g31690	transcriptional factor B3 family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1607803_at	CB975690	hypothetical protein LOC100264130	-	7e-8	At1g20200	EMB2719 (EMBRYO DEFECTIVE 2719)	C.G.	S.X.	Please select
0.02	8e+0	30	1622031_at	CD713034	-	-	4e-1	At1g73890	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.01	8e+0	30	1621632_at	BQ794172	hypothetical protein LOC100266611	-	9e-28	At3g54020	phosphatidic acid phosphatase-related / PAP2-related	C.G.	S.X.	Please select
0.02	8e+0	30	1620766_at	CF609305	hypothetical protein LOC100249220	-	9e-18	At1g23000	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.02	8e+0	30	1620130_at	CF404666	hypothetical protein LOC100257505	-	4e+0	At1g10800	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-6	54	Arabidopsis thaliana	At5g04630	830340	CYP77A9	member of CYP77A	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	5e-11	69	Glycine max	Gma.137.1.S1_at	AF022464.1	-	-	1e-3	At5g04660	CYP77A4	C.G.	S.X.	Please select
0.03	6e-2	38	Hordeum vulgare	Contig15560_at	Contig15560	-	-	3e-3	At3g52970	CYP76G1	C.G.	S.X.	Please select
0.04	2e-5	52	Oryza sativa	OsAffx.30725.2.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	6e-4	46	Populus trichocarpa	Ptp.962.1.S1_s_at	CK089762	hypothetical protein	-	3e-1	At3g15351	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	5e-1	36	Triticum aestivum	Ta.9967.2.S1_s_at	CA714915	-	-	1e-1	At5g04660	CYP77A4	C.G.	S.X.	Please select
0.05	2e-1	36	Zea mays	Zm.18561.1.A1_at	CO517421	hypothetical protein LOC100193602	-	1e-1	At5g04660	CYP77A4	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage