Gene omics information

Query gene ID	1611279_s_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	81.9	1611279_s_at	CB343789	-	-	0	Atcg01010	-	S.X.	H.G.	Please select
0.91	98.8	1610347_s_at	CF202826.1	similar to NADH dehydrogenase subunit I	-	2e+0	At1g35430	unknown protein	S.X.	H.G.	Please select
0.83	94.6	1621590_at	CF203585.1	-	-	9e-2	At1g10140	-	S.X.	H.G.	Please select
0.83	94.6	1618737_x_at	CF202021.1	-	-	1e+0	At4g09650	ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE)	S.X.	H.G.	Please select
0.67	87.9	1609320_x_at	CF202708.1	-	-	2e-1	At4g28703	-	S.X.	H.G.	Please select
0.55	77.3	1611270_s_at	CF213958	-	-	1e-52	Atcg00070	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.2	98.2	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
5.1	98.1	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
4.8	97.8	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
4.7	97.7	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
4.7	97.7	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
4.6	97.6	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
4.5	97.5	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
4.5	97.5	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
4.4	97.3	GSM147730	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	59
4.3	97.2	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-2	40	1617449_at	CD010357	-	-	0	Atmg00570	-	C.G.	S.X.	Please select
0.02	3e-2	40	1613633_at	CD010357	-	-	0	Atmg00570	-	C.G.	S.X.	Please select
0.01	2e+0	34	1620244_at	CD720153	-	-	2e-136	Atcg01250	-	C.G.	S.X.	Please select
0.01	2e+0	34	1618670_at	BQ798857	hypothetical protein LOC100264831	-	2e-14	At5g27560	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	1614501_at	CB920222	-	-	3e-2	At4g00070	-	C.G.	S.X.	Please select
0.01	2e+0	34	1613774_s_at	CB920222	-	-	3e-2	At4g00070	-	C.G.	S.X.	Please select
0.01	2e+0	34	1612974_at	CF513889	-	-	3e-4	At3g20890	RNA binding / nucleic acid binding / nucleotide binding	C.G.	S.X.	Please select
0.01	2e+0	34	1611257_a_at	CB976439	hypothetical protein LOC100250923	-	3e-21	At5g08100	L-asparaginase / L-asparagine amidohydrolase	C.G.	S.X.	Please select
0.01	2e+0	34	1607627_at	CD720153	-	-	2e-136	Atcg01250	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	0	674	Arabidopsis thaliana	Atcg01010	-	-	Chloroplast encoded NADH dehydrogenase unit.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	4e-2	42	Glycine max	GmaAffx.45058.2.S1_at	BM091857	-	-	3e-1	At2g27250	CLV3 (CLAVATA3)	C.G.	S.X.	Please select
0.01	3e-3	44	Hordeum vulgare	Contig21492_at	Contig21492	-	-	4e+0	At3g58190	LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29)	C.G.	S.X.	Please select
0.19	3e-142	508	Oryza sativa	OsAffx.32222.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.24	0	640	Populus trichocarpa	PtpAffx.215172.1.S1_at	pmrna29214	hypothetical protein	-	2e-180	Atcg01010	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.15	4e-72	274	Triticum aestivum	TaAffx.128617.1.S1_x_at	CA670913	-	-	1e-47	Atcg01010	-	C.G.	S.X.	Please select
0.19	1e-135	484	Zea mays	ZmAffx.1334.1.S1_at	11990232-82	-	-	7e-113	Atcg01010	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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