Gene omics information

Query gene ID	1611247_s_at
Gene name	similar to cytochrome f
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1611247_s_at	CF206748.1	similar to cytochrome f	-	2e+0	At1g65490	unknown protein	S.X.	H.G.	Please select
0.83	94.6	1616847_s_at	CA816751	hypothetical protein LOC100267942	-	2e-12	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	S.X.	H.G.	Please select
0.67	87.9	1614231_s_at	CB970079	hypothetical protein LOC100245250	-	3e-5	At3g15360	TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4)	S.X.	H.G.	Please select
0.57	79.8	1613691_s_at	CF511746	hypothetical protein LOC100254533	-	5e-35	At2g05100	LHCB2.1	S.X.	H.G.	Please select
0.50	72.7	1610039_s_at	CA817529	similar to NADH-plastoquinone oxidoreductase subunit K	-	0	Atcg00480	-	S.X.	H.G.	Please select
0.38	53.6	1622302_s_at	CF207602	hypothetical protein LOC100245459	-	2e-19	At5g66570	PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.7	93.0	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
2.7	93.0	GSM147681	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	10
2.6	92.5	GSM147699	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	28
2.6	92.5	GSM147691	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 4 h post inoculation	20
2.6	92.5	GSM147690	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	19
2.6	92.5	GSM147672	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	1
2.6	92.5	GSM147704	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	33
2.6	92.5	GSM147676	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	5
2.5	91.9	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22
2.5	91.9	GSM147680	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	9

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	6e-115	410	1620102_at	CF514700	-	-	0	Atcg00540	-	C.G.	S.X.	Please select
0.05	6e-115	410	1615099_s_at	CB970583	hypothetical protein LOC100242764 /// similar to cytochrome f	-	0	Atcg00540	-	C.G.	S.X.	Please select
0.05	6e-115	410	1612526_s_at	CF514700	-	-	0	Atcg00540	-	C.G.	S.X.	Please select
0.05	6e-115	410	1612624_at	CB974055	similar to Os06g0598500	-	0	Atcg00540	-	C.G.	S.X.	Please select
0.03	1e-1	34	1621949_at	CB970083	-	-	2e+0	At4g12100	ubiquitin protein ligase binding	C.G.	S.X.	Please select
0.04	6e-1	32	1606494_at	CB912016	hypothetical protein LOC100260130	-	8e-45	At3g17000	UBC32 (ubiquitin-conjugating enzyme 32)	C.G.	S.X.	Please select
0.03	2e+0	30	1620421_at	BQ797148	hypothetical protein LOC100255218	-	4e-31	At1g50480	THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE)	C.G.	S.X.	Please select
0.03	9e+0	28	1620590_at	CB005729	-	-	6e-9	At2g05990	MOD1 (MOSAIC DEATH 1)	C.G.	S.X.	Please select
0.01	9e+0	28	1619744_at	CF208885	hypothetical protein LOC100249117	-	2e-94	At1g18070	EF-1-alpha-related GTP-binding protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	2e+0	32	Arabidopsis thaliana	At1g65490	842861	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	2e-1	36	Glycine max	Gma.4682.1.S1_at	AW306683	-	-	1e-13	At3g54560	HTA11	C.G.	S.X.	Please select
0.07	1e+1	28	Hordeum vulgare	HVSMEn0003C06f_at	HVSMEn0003C06f	-	-	2e+1	At3g22600	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.03	2e-1	36	Oryza sativa	Os04g0221500	9632.m01325	-	-	2e+0	At2g36210	auxin-responsive family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	5e-5	48	Populus trichocarpa	PtpAffx.27477.1.S1_at	BU888841	-	-	2e-44	Atcg00550	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	2e+0	32	Triticum aestivum	TaAffx.128618.3.A1_at	CA626288	-	-	1e-2	At3g58350	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select
0.06	1e+1	28	Zea mays	ZmAffx.1291.1.S1_s_at	40794996-23	-	-	2e-1	At5g39930	CLPS5 (CLP1-SIMILAR PROTEIN 5)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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