Gene omics information

Query gene ID	1611216_at
Gene name	hypothetical protein LOC100262087
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	90.8	1611216_at	CB912018	hypothetical protein LOC100262087	-	4e-126	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	S.X.	H.G.	Please select
0.73	90.8	1614627_at	CF518499	hypothetical protein LOC100247379	-	1e-1	At4g31130	unknown protein	S.X.	H.G.	Please select
0.67	87.9	1607439_at	CF512630	hypothetical protein LOC100262218	-	9e-18	At1g60170	emb1220 (embryo defective 1220)	S.X.	H.G.	Please select
0.60	81.9	1613287_at	BQ795475	-	-	1e-2	At1g76450	oxygen-evolving complex-related	S.X.	H.G.	Please select
0.33	45.7	1620631_at	CB339382	hypothetical protein LOC100255601	-	1e-63	At1g16700	NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial, putative	S.X.	H.G.	Please select
0.19	20.9	1619333_at	CF201109.1	hypothetical protein LOC100245238	-	3e-51	At1g03910	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.3	90.7	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM436418	V. riparia (VR, PI588259) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM287881	Green soft berry B10 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM287871	Green hard berry C4 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM287886	Green soft berry C22 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM287884	Green soft berry C7 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM287892	Pink soft berry C11 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	6e-2	38	1609671_at	CF512301	hypothetical protein LOC100258051	-	2e-8	At3g06170	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please select
0.01	3e-1	36	1613324_at	CB971883	hypothetical protein LOC100246997	-	4e-54	At1g53440	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please select
0.01	1e+0	34	1619585_at	CD800299	hypothetical protein LOC100252208	-	4e-1	At1g72620	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please select
0.01	1e+0	34	1612900_at	CD797784	hypothetical protein LOC100259949	-	5e+0	At5g44585	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	1612757_at	CD801743	hypothetical protein LOC100241266	-	1e+0	At2g32560	F-box family protein	C.G.	S.X.	Please select
0.01	1e+0	34	1611780_at	CD798025	similar to granule-bound starch synthase	-	5e-20	At1g32900	starch synthase, putative	C.G.	S.X.	Please select
0.02	1e+0	34	1609475_at	CF210441	hypothetical protein LOC100257746	-	7e-24	At1g72810	threonine synthase, putative	C.G.	S.X.	Please select
0.01	1e+0	34	1608334_at	CA817492	-	-	8e-2	At2g39370	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	1607182_s_at	CD800686	hypothetical protein LOC100265784	-	3e-15	At2g47710	universal stress protein (USP) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.61	4e-126	452	Arabidopsis thaliana	At1g16180	838187	TMS membrane family protein / tumour differentially expressed (TDE) family protein	F:molecular_function unknown;P:unknown;C:endomembrane system, membrane;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.25	4e-22	107	Glycine max	GmaAffx.66328.1.S1_at	AW277770	-	-	3e-13	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please select
0.21	4e-32	139	Hordeum vulgare	Contig3707_s_at	Contig3707	-	-	1e-23	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please select
0.28	1e-19	99	Oryza sativa	Os02g0792900	AK068367.1	-	TMS membrane protein/tumour differentiallyexpressed protein family protein	1e-15	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.56	1e-148	527	Populus trichocarpa	PtpAffx.1257.1.S1_a_at	CF228330	hypothetical protein	-	3e-65	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.15	3e-28	127	Triticum aestivum	Ta.906.1.S1_at	CK195658	-	-	3e-22	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please select
0.23	2e-21	103	Zea mays	Zm.747.1.A1_at	CF627612	hypothetical protein LOC100191588	-	3e-22	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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