CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1611211_at

Gene name 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 81.9 1611211_at CF603196 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase - 3e-10 At1g22410 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative S.X. H.G.
0.50 72.7 1621405_at CF517917 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase - 3e-4 At1g22410 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative S.X. H.G.
0.43 61.5 1619357_at CB972316 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase - 3e-71 At1g22410 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative S.X. H.G.
0.36 50.7 1616944_at CF211395 hypothetical protein LOC100261951 - 1e-1 At5g65400 unknown protein S.X. H.G.
0.29 37.7 1615742_at CB970670 5-enolpyruvylshikimate-3-phosphate synthase - 8e-121 At2g45300 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase S.X. H.G.
0.22 25.6 1622282_at CD712313 hypothetical protein LOC100245852 - 2e-10 At1g06020 pfkB-type carbohydrate kinase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.3 99.9 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
13.1 99.8 GSM299456 C_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.4 99.2 GSM299454 B_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.2 99.1 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.6 98.9 GSM299460 D_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.5 98.9 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.3 98.8 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
6.0 98.7 GSM436424 V. riparia (VR, PI588259) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.5 97.5 GSM436426 V. riparia (VR, PI588259) SD, 13h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.8 96.4 GSM436428 V. riparia (VR, PI588259) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 1e-19 95 1621405_at CF517917 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase - 3e-4 At1g22410 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative C.G. S.X.
0.04 4e-13 73 1619357_at CB972316 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase - 3e-71 At1g22410 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative C.G. S.X.
0.03 3e-1 34 1620741_at CB972037 hypothetical protein LOC100243299 - 2e-2 At5g58270 STA1 (STARIK 1) C.G. S.X.
0.03 3e-1 34 1606959_at CF373364 hypothetical protein LOC100265624 - 1e-7 At2g40410 Ca(2+)-dependent nuclease, putative C.G. S.X.
0.03 1e+0 32 1622043_at CF211984 - - 1e+0 At1g10100 unknown protein C.G. S.X.
0.02 1e+0 32 1621351_s_at CB340283 hypothetical protein LOC100250504 - 1e-39 At1g29930 CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1) C.G. S.X.
0.04 1e+0 32 1621399_s_at CF372346 - - 3e-13 At3g63190 RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR) C.G. S.X.
0.03 1e+0 32 1614832_at CA808973 hypothetical protein LOC100258010 - 3e-1 At4g25820 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) C.G. S.X.
0.02 1e+0 32 1612704_at CF403828 hypothetical protein LOC100262854 - 5e-66 At2g20130 LCV1 (LIKE COV 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e-10 65 Arabidopsis thaliana At1g22410 838847 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative F:3-deoxy-7-phosphoheptulonate synthase activity;P:aromatic amino acid family biosynthetic process;C:membrane;OBPF - - - C.G. S.X.
0.16 2e+0 34 Glycine max GmaAffx.71055.1.S1_at BQ627638 - - 4e+0 At5g17130 cysteine-type peptidase C.G. S.X.
0.05 2e-3 42 Hordeum vulgare Contig3713_s_at Contig3713 - - 3e-10 At4g33510 DHS2 (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase) C.G. S.X.
0.14 1e-14 81 Oryza sativa Os03g0389700 AB122057.1 - Phospho-2-dehydro-3-deoxyheptonate aldolase 1,chloroplast precursor (EC 2.5.1.54)(Phospho-2-keto-3-deoxyheptonate aldolase 1) (DAHPsynthetase 1) (3-deoxy-D-arabino-heptulosonate7-phosphate synthase 1) 2e-42 At1g22410 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative C.G. S.X.
0.11 3e-14 79 Populus trichocarpa PtpAffx.7456.1.S1_at CK318652 2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase - 2e-79 At1g22410 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative C.G. S.X.
0.04 5e-3 42 Triticum aestivum Ta.1906.1.S1_at BJ285249 - - 3e-10 At4g33510 DHS2 (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase) C.G. S.X.
0.05 3e-5 48 Zea mays Zm.4468.3.S1_at CF627497 phospho-2-dehydro-3-deoxyheptonate aldolase 1 - 4e-37 At1g22410 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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