Gene omics information

Query gene ID	1611197_at
Gene name	hypothetical protein LOC100259765
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1611197_at	CA812412	hypothetical protein LOC100259765	-	4e-16	At1g78895	-	S.X.	H.G.	Please select
0.35	48.5	1612000_at	CB342454	hypothetical protein LOC100260307	-	2e-1	At1g27130	ATGSTU13 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 13)	S.X.	H.G.	Please select
0.27	34.0	1614534_at	CF603286	hypothetical protein LOC100253600	-	3e-38	At4g15080	zinc finger (DHHC type) family protein	S.X.	H.G.	Please select
0.16	16.7	1615292_at	CF214583	similar to oligopeptidase A	-	1e-37	At5g10540	peptidase M3 family protein / thimet oligopeptidase family protein	S.X.	H.G.	Please select
0.12	12.1	1621964_at	CF207985	hypothetical protein LOC100259817	-	2e-1	At3g44950	glycine-rich protein	S.X.	H.G.	Please select
0.07	7.8	1615154_at	CF209662	hypothetical protein LOC100251043	-	8e-6	At3g09085	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.3	97.2	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
2.6	92.5	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22
2.4	91.3	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436412	V. riparia (VR, PI588259) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-1	34	1611869_at	CF609640	hypothetical protein LOC100254356	-	5e-9	At2g24830	zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein	C.G.	S.X.	Please select
0.02	2e+0	32	1621264_at	CF212800	hypothetical LOC100251720	-	2e-18	At2g40360	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1619450_s_at	CF215109	hypothetical protein LOC100258977	-	6e-63	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	C.G.	S.X.	Please select
0.02	2e+0	32	1612035_at	CD801585	hypothetical protein LOC100252162	-	6e-1	At1g66235	unknown protein	C.G.	S.X.	Please select
0.02	7e+0	30	1622341_at	CB978009	hypothetical protein LOC100243509	-	5e-21	At5g52210	ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.02	7e+0	30	1621480_at	BQ796837	hypothetical protein LOC100257915	-	3e-1	At2g29050	ATRBL1 (Arabidopsis thaliana Rhomboid-like 1)	C.G.	S.X.	Please select
0.02	7e+0	30	1621349_s_at	CF372417	hypothetical protein LOC100258686	-	5e-1	At1g15340	MBD10	C.G.	S.X.	Please select
0.02	7e+0	30	1620966_at	CF414903	hypothetical protein LOC100256915	-	6e+0	Atmg01200	-	C.G.	S.X.	Please select
0.02	7e+0	30	1621025_at	CD721351	-	-	3e-1	At1g28190	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	4e-16	85	Arabidopsis thaliana	At1g78895	844227	-	F:unknown;P:biological_process unknown;C:endomembrane system, endoplasmic reticulum;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	2e-15	83	Glycine max	Gma.11353.1.S1_at	AW397565	-	-	2e-3	At1g78895	-	C.G.	S.X.	Please select
0.23	1e-11	69	Hordeum vulgare	Contig12349_at	Contig12349	-	-	2e-3	At1g78895	-	C.G.	S.X.	Please select
0.03	1e+1	32	Oryza sativa	Os04g0160800	9632.m00698	-	-	3e+0	At3g15030	TCP4 (TCP family transcription factor 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.23	2e-12	73	Populus trichocarpa	PtpAffx.126565.1.S1_at	CV228828	hypothetical protein	-	8e-15	At1g78895	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	4e-4	46	Triticum aestivum	TaAffx.82791.1.S1_at	CA666968	-	-	4e+0	At5g57345	unknown protein	C.G.	S.X.	Please select
0.02	1e+1	30	Zea mays	Zm.8306.1.A1_at	BM073602	-	-	3e-4	At5g01960	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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