CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1611124_at

Gene name similar to Probable pyridoxal biosynthesis protein PDX1

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 92.3 1611124_at CA818028 similar to Probable pyridoxal biosynthesis protein PDX1 - 5e-60 At5g01410 RSR4 (REDUCED SUGAR RESPONSE 4) S.X. H.G.
0.91 98.8 1616214_at CF215813 hypothetical protein LOC100252714 - 1e+0 At4g27250 dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family S.X. H.G.
0.80 93.6 1616613_at CD009052 hypothetical protein LOC100259706 - 6e-1 At4g02920 unknown protein S.X. H.G.
0.67 87.9 1621979_at CB339366 hypothetical protein LOC100254010 - 7e-12 At1g62850 - S.X. H.G.
0.47 67.7 1614178_at CD714991 - - 8e-106 At2g39730 RCA (RUBISCO ACTIVASE) S.X. H.G.
0.46 66.5 1611274_at CF208296 hypothetical protein LOC100247974 - 3e-71 At5g58330 malate dehydrogenase (NADP), chloroplast, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.1 98.1 GSM322366 genotype: Chardonnay - disease type: Healthy - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.7 97.7 GSM322370 genotype: Incrocio Manzoni - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.5 97.5 GSM147707 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation 36
4.2 97.1 GSM147701 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation 30
4.0 96.7 GSM147700 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation 29
3.9 96.6 GSM147688 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 17
3.8 96.4 GSM147695 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation 24
3.7 96.2 GSM322365 genotype: Chardonnay - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.7 96.2 GSM147683 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 12
3.6 96.0 GSM147694 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation 23
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-7 56 1616212_at CD717201 - - 3e-1 At1g01810 unknown protein C.G. S.X.
0.05 2e-7 56 1612404_at CD717201 hypothetical protein LOC100242970 - 3e-1 At1g01810 unknown protein C.G. S.X.
0.07 3e-6 52 1608148_at CF204506.1 - - 1e-1 At3g16050 A37 C.G. S.X.
0.07 2e-4 46 1612435_s_at CF404469 hypothetical protein LOC100242970 - 1e+0 At3g16050 A37 C.G. S.X.
0.01 5e-2 38 1615028_at CF512306 hypothetical protein LOC100244467 - 5e-20 At3g60530 zinc finger (GATA type) family protein C.G. S.X.
0.01 7e-1 34 1619477_at CA809390 hypothetical protein LOC100250737 - 3e-59 At3g48730 GSA2 (glutamate-1-semialdehyde 2,1-aminomutase 2) C.G. S.X.
0.02 7e-1 34 1614198_at CF511261 - - 4e+0 At4g19120 ERD3 (early-responsive to dehydration 3) C.G. S.X.
0.03 7e-1 34 1609570_at CF511758 - - 8e-2 At5g42780 AtHB27 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 27) C.G. S.X.
0.01 7e-1 34 1607472_at CF208707 hypothetical protein LOC100255051 - 6e-23 At1g59610 ADL3 (ARABIDOPSIS DYNAMIN-LIKE 3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.63 5e-60 232 Arabidopsis thaliana At5g01410 831738 RSR4 (REDUCED SUGAR RESPONSE 4) Encodes a protein predicted to function in tandem with PDX2 to form glutamine amidotransferase complex with involved in vitamin B6 biosynthesis. - - - C.G. S.X.
0.50 6e-110 398 Glycine max Gma.4425.1.S1_a_at BQ297572 pyridoxine biosynthesis protein - 3e-19 At5g01410 RSR4 (REDUCED SUGAR RESPONSE 4) C.G. S.X.
0.30 9e-88 323 Hordeum vulgare Contig3920_at Contig3920 - - 3e-21 At5g01410 RSR4 (REDUCED SUGAR RESPONSE 4) C.G. S.X.
0.45 5e-80 299 Oryza sativa Os11g0708500 AK063409.1 - Vitamin B6 biosynthesis protein family protein 3e-9 At5g01410 RSR4 (REDUCED SUGAR RESPONSE 4) C.G. S.X.
0.17 2e-26 121 Populus trichocarpa PtpAffx.73516.1.S1_at CN524588 hypothetical protein - 4e-45 At5g01410 RSR4 (REDUCED SUGAR RESPONSE 4) C.G. S.X.
0.27 4e-76 286 Triticum aestivum Ta.5738.1.S1_at BE492123 - - 2e-13 At5g01410 RSR4 (REDUCED SUGAR RESPONSE 4) C.G. S.X.
0.27 6e-64 244 Zea mays Zm.18420.1.S1_at CA403504 hypothetical protein LOC100272732 - 8e-7 At5g01410 RSR4 (REDUCED SUGAR RESPONSE 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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