Gene omics information

Query gene ID	1611102_at
Gene name	hypothetical protein LOC100259129
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.3	1611102_at	CF603491	hypothetical protein LOC100259129	-	4e-22	At3g58730	vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD)	S.X.	H.G.	Please select
0.73	90.8	1621762_at	CF371697	hypothetical protein LOC100242812	-	6e-30	At3g55380	UBC14 (ubiquitin-conjugating enzyme 14)	S.X.	H.G.	Please select
0.33	45.7	1622567_at	CF516028	hypothetical protein LOC100266603	-	2e-20	At5g27490	integral membrane Yip1 family protein	S.X.	H.G.	Please select
0.29	37.7	1606778_at	CF607072	hypothetical protein LOC100261953	-	6e-30	At3g56740	ubiquitin-associated (UBA)/TS-N domain-containing protein	S.X.	H.G.	Please select
0.25	30.5	1609445_at	CF215229	hypothetical protein LOC100242218	-	6e-69	At4g29160	SNF7.1	S.X.	H.G.	Please select
0.10	10.3	1616842_s_at	CA814075	hypothetical protein LOC100248125	-	5e-1	At3g27080	TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.7	96.2	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.6	96.0	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.4	95.5	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.6	92.5	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	9e-2	36	1613047_at	CF372064	hypothetical protein LOC100249106	-	4e-84	At2g19790	clathrin adaptor complex small chain family protein	C.G.	S.X.	Please select
0.02	4e-1	34	1621414_at	CB971931	hypothetical protein LOC100263436	-	1e-36	At3g02210	COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR)	C.G.	S.X.	Please select
0.04	4e-1	34	1619566_at	CD716633	-	-	4e-1	At4g09649	unknown protein	C.G.	S.X.	Please select
0.04	4e-1	34	1615795_at	CD716633	-	-	4e-1	At4g09649	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	1621729_at	CB347151	hypothetical protein LOC100257717	-	2e-56	At4g31700	RPS6 (RIBOSOMAL PROTEIN S6)	C.G.	S.X.	Please select
0.01	1e+0	32	1620850_at	CB343297	hypothetical protein LOC100241461	-	2e-140	At3g56940	CRD1 (COPPER RESPONSE DEFECT 1)	C.G.	S.X.	Please select
0.02	1e+0	32	1620537_at	BM437394	hypothetical protein LOC100266362	-	5e-20	At1g24560	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	1611576_at	CF519168	-	-	2e-22	At5g54290	cytochrome c biogenesis protein family	C.G.	S.X.	Please select
0.02	1e+0	32	1606749_s_at	CF519168	hypothetical protein LOC100245228	-	2e-22	At5g54290	cytochrome c biogenesis protein family	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	4e-22	105	Arabidopsis thaliana	At3g58730	825042	vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD)	F:ATPase activity, coupled to transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:vacuolar membrane, plasma membrane, vacuole, membrane, plant-type vacuole;BMAOFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-1	38	Glycine max	Gma.11871.1.S1_at	CD409660	-	-	8e-1	At1g01520	myb family transcription factor	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	HVSMEk0009E14r2_at	HVSMEk0009E14r2	-	-	7e-2	At4g35770	SEN1 (SENESCENCE 1)	C.G.	S.X.	Please select
0.02	9e+0	32	Oryza sativa	Os05g0334800	9633.m02440	-	Zn-finger, CCHC type domain containing protein	1e-2	At5g01820	ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.40	3e-116	418	Populus trichocarpa	PtpAffx.66419.1.S1_at	CV237594	-	-	4e-39	At3g58730	vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	2e-2	40	Triticum aestivum	Ta.21235.1.S1_x_at	CA647047	-	-	2e-13	At3g58730	vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD)	C.G.	S.X.	Please select
0.02	2e+0	32	Zea mays	Zm.8044.1.S1_at	BM072734	hypothetical protein LOC100276682	-	6e-1	At1g06060	RanBPM-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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