CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1611089_at

Gene name hypothetical protein LOC100245763 /// hypothetical protein LOC100250595

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.47 67.7 1611089_at CF518359 hypothetical protein LOC100245763 /// hypothetical protein LOC100250595 - 1e+0 At5g49665 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.50 72.7 1617587_at CF403573 hypothetical protein LOC100246521 - 1e+0 At4g24750 - S.X. H.G.
0.36 50.7 1612434_at CD710767 hypothetical protein LOC100257120 - 5e-8 At2g30520 RPT2 (ROOT PHOTOTROPISM 2) S.X. H.G.
0.25 30.5 1620085_at CF516195 hypothetical protein LOC100266649 - 1e+0 At1g23240 caleosin-related family protein S.X. H.G.
0.22 25.6 1621827_at CF373383 similar to flowering locus C-like MADS-box protein - 4e-11 At2g45650 AGL6 (AGAMOUS-LIKE 6) S.X. H.G.
0.12 12.1 1620920_at CB349109 hypothetical protein LOC100245710 - 6e-5 At1g70950 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.8 99.3 GSM436350 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
7.2 99.1 GSM436351 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
6.7 99.0 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
5.4 98.3 GSM436391 V. riparia (VR, PI588259) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
5.3 98.2 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
5.2 98.2 GSM436349 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.3 97.2 GSM436381 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
4.1 96.9 GSM436347 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.1 96.9 GSM436392 V. riparia (VR, PI588259) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.1 96.9 GSM436378 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-4 46 1613208_at CF209522 hypothetical protein LOC100267894 - 8e-38 At1g16610 SR45 C.G. S.X.
0.03 2e-3 42 1615576_at CB970198 - - 1e-147 At1g09840 ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41) C.G. S.X.
0.05 2e-3 42 1610745_at CB914313 - - 4e+0 At3g24250 glycine-rich protein C.G. S.X.
0.04 6e-3 40 1611650_at CA808599 hypothetical protein LOC100244122 - 3e-26 At2g23320 WRKY15 C.G. S.X.
0.02 3e-2 38 1615352_s_at CB972821 hypothetical protein LOC100248779 - 5e-138 At4g13930 SHM4 (serine hydroxymethyltransferase 4) C.G. S.X.
0.02 1e-1 36 1621570_at CB339408 hypothetical protein LOC100255693 - 4e-5 At2g34070 unknown protein C.G. S.X.
0.03 1e-1 36 1610066_at BQ798633 hypothetical protein LOC100265970 - 9e-2 At3g01700 AGP11 C.G. S.X.
0.02 4e-1 34 1621978_at CB837910 - - 3e-23 At3g20362 unknown protein C.G. S.X.
0.02 4e-1 34 1619532_at CF209809 hypothetical protein LOC100266310 - 5e-7 At5g67140 F-box family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Arabidopsis thaliana At5g49665 835029 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:plasma membrane;BPOMF - - - C.G. S.X.
0.03 7e+0 32 Glycine max PsAffx.CL365Contig1_s_at PsAffx.CL365Contig1 - - 4e+0 At5g23840 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig15956_at Contig15956 - - 7e-1 At4g00130 - C.G. S.X.
0.03 1e+1 32 Oryza sativa Os03g0245900 9631.m01359 - - 2e-4 At1g22910 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.12 5e-7 56 Populus trichocarpa PtpAffx.137797.1.S1_at DN500862 hypothetical protein - 6e+0 At4g21960 PRXR1 C.G. S.X.
0.03 1e+0 34 Triticum aestivum TaAffx.78739.1.S1_at CA727962 - - 7e-2 At5g16030 unknown protein C.G. S.X.
0.03 2e+0 32 Zea mays Zm.7272.1.S1_at BI430568 hypothetical protein LOC100275279 - 1e+0 At3g28590 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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