CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1611054_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.92 99.0 1611054_at CF516017 - - 4e+0 Atmg01290 - S.X. H.G.
0.30 39.4 1612046_at CD800218 hypothetical protein LOC100249809 - 7e-14 At5g51280 DEAD-box protein abstrakt, putative S.X. H.G.
0.22 25.6 1612341_s_at CB343756 - - 8e-95 Atcg00360 - S.X. H.G.
0.15 15.6 1613440_at CB976741 hypothetical protein LOC100252018 - 4e-10 At1g53450 unknown protein S.X. H.G.
0.14 14.4 1613801_at CF514247 hypothetical protein LOC100240794 - 1e+0 At3g59960 ASHH4 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH4) S.X. H.G.
0.11 11.3 1619694_at CF516591 hypothetical protein LOC100256726 - 3e-1 At2g29980 FAD3 (FATTY ACID DESATURASE 3) S.X. H.G.
0.09 9.4 1617034_at CB342279 hypothetical protein LOC100248287 - 1e+0 At5g09480 hydroxyproline-rich glycoprotein family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.7 99.0 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.3 97.2 GSM322363 genotype: Chardonnay - disease type: Bois Noir infected - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.8 96.4 GSM322366 genotype: Chardonnay - disease type: Healthy - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.4 95.5 GSM436424 V. riparia (VR, PI588259) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.3 95.2 GSM436385 Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM436398 V. riparia (VR, PI588259) LD, 15h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.7 93.0 GSM322365 genotype: Chardonnay - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.4 91.3 GSM147708 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 37
2.3 90.7 GSM436360 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 6e-21 99 1618712_at CB003306 - - 3e-1 At4g21330 DYT1 (DYSFUNCTIONAL TAPETUM 1) C.G. S.X.
0.11 6e-21 99 1614914_at CB003306 - - 3e-1 At4g21330 DYT1 (DYSFUNCTIONAL TAPETUM 1) C.G. S.X.
0.10 9e-20 95 1611923_at CA817577 - - 3e-1 At5g63740 zinc finger protein-related C.G. S.X.
0.13 2e-17 87 1613010_at CF403543 - - 4e+0 At4g21890 unknown protein C.G. S.X.
0.10 3e-16 83 1616217_at CB003366 - - 5e+0 At4g13830 J20 (DNAJ-LIKE 20) C.G. S.X.
0.10 3e-16 83 1612410_at CB003366 - - 5e+0 At4g13830 J20 (DNAJ-LIKE 20) C.G. S.X.
0.07 6e-15 79 1613712_at CF403703 hypothetical protein LOC100248230 - 3e-9 At2g37478 CPuORF52 (Conserved peptide upstream open reading frame 52) C.G. S.X.
0.05 9e-14 75 1617822_at CB976807 - - 1e-42 At3g46010 ADF1 (ACTIN DEPOLYMERIZING FACTOR 1) C.G. S.X.
0.03 5e-3 40 1607321_at CB973341 hypothetical protein LOC100241015 - 1e-36 At1g48850 EMB1144 (embryo defective 1144) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e+0 32 Arabidopsis thaliana Atmg01290 - - hypothetical protein - - - C.G. S.X.
0.04 2e-2 40 Glycine max GmaAffx.12740.2.S1_at AW703620 - - 2e-1 At1g76190 auxin-responsive family protein C.G. S.X.
0.03 8e+0 30 Hordeum vulgare Contig8737_at Contig8737 - - 2e-11 At1g15120 ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative C.G. S.X.
0.03 8e+0 32 Oryza sativa OsAffx.24737.1.S1_at - - - 0 C.G. S.X.
0.03 3e-1 36 Populus trichocarpa PtpAffx.122748.1.S1_at CK107130 - - 3e-1 At5g60730 anion-transporting ATPase family protein C.G. S.X.
0.04 3e-1 36 Triticum aestivum TaAffx.86551.1.S1_x_at CA605918 - - 2e+0 At5g15265 unknown protein C.G. S.X.
0.03 2e+0 32 Zea mays Zm.835.2.A1_a_at CF633042 hypothetical protein LOC100191164 - 3e-1 At2g28550 RAP2.7 (RELATED TO AP2.7) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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