CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1611053_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 80.6 1611053_at CF405013 - - 1e-15 At5g28540 BIP1 S.X. H.G.
0.41 58.7 1613263_at CB918718 - - 2e-12 At4g16580 catalytic S.X. H.G.
0.40 57.7 1607830_at CF568994 - - 2e-72 At3g22110 PAC1 S.X. H.G.
0.40 57.7 1613526_at CF568881 - - 2e-88 At5g56030 HSP81-2 (HEAT SHOCK PROTEIN 81-2) S.X. H.G.
0.29 37.7 1618102_at CF415084 - - 7e-37 At2g18710 SCY1 (SecY Homolog 1) S.X. H.G.
0.27 34.0 1613383_at CB922386 - - 5e-68 At5g45390 CLPP4 (CLP PROTEASE P4) S.X. H.G.
0.26 32.0 1617721_at CF568847 - - 1e-76 At5g56030 HSP81-2 (HEAT SHOCK PROTEIN 81-2) S.X. H.G.
0.18 19.4 1619724_at CA818237 - - 1e-23 At5g27640 TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) S.X. H.G.
0.17 18.2 1617607_at CB918932 - - 3e-2 At4g17090 CT-BMY (CHLOROPLAST BETA-AMYLASE) S.X. H.G.
0.14 14.4 1608570_at CD717861 - - 1e-3 At3g48590 NF-YC1 (NUCLEAR FACTOR Y, SUBUNIT C1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.9 98.6 GSM147675 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 4
5.8 98.6 GSM147673 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 2
5.5 98.4 GSM147676 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 5
5.3 98.2 GSM436368 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.6 97.6 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
4.2 97.1 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.6 96.0 GSM436390 V. riparia (VR, PI588259) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.4 95.5 GSM147677 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 6
3.2 94.9 GSM436413 V. riparia (VR, PI588259) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM436347 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 2e-98 357 1619202_s_at CB347488 hypothetical protein LOC100251379 - 8e-96 At5g42020 BIP2 C.G. S.X.
0.25 2e-98 357 1607002_at CB347488 hypothetical protein LOC100251379 - 8e-96 At5g42020 BIP2 C.G. S.X.
0.16 7e-30 129 1612361_at CF202732.1 - - 3e-58 At5g42020 BIP2 C.G. S.X.
0.19 3e-29 127 1619528_s_at CF215279 hypothetical protein LOC100253826 - 2e-53 At5g42020 BIP2 C.G. S.X.
0.02 1e-3 42 1616246_at CF207965 similar to HSC70-1 (heat shock cognate 70 kDa protein 1); ATP binding - 0 At5g02500 HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) C.G. S.X.
0.02 7e-2 36 1621420_at AY275713.1 FUL-like protein - 5e-38 At5g60910 AGL8 (agamous-like 8) C.G. S.X.
0.04 3e-1 34 1619752_at BQ797745 hypothetical protein LOC100266665 - 8e-8 At4g19390 - C.G. S.X.
0.02 3e-1 34 1614391_at CD714608 hypothetical protein LOC100247283 - 4e-8 At4g28400 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.03 3e-1 34 1612000_at CB342454 hypothetical protein LOC100260307 - 2e-1 At1g27130 ATGSTU13 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 13) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 1e-15 83 Arabidopsis thaliana At5g28540 832950 BIP1 Encodes the luminal binding protein BiP, an ER-localized member of the HSP70 family. BiP is composed of an N-terminal ATP binding domain and a C-terminal domain that binds to hydrophobic patches on improperly/incompletely folded proteins in an ATP-dependent manner. - - - C.G. S.X.
0.10 5e-25 115 Glycine max Gma.45.1.S1_at U08384.1 BiP isoform A - 8e-113 At5g28540 BIP1 C.G. S.X.
0.07 1e-13 75 Hordeum vulgare Contig1615_s_at Contig1615 - - 2e-103 At5g42020 BIP2 C.G. S.X.
0.07 2e-19 97 Oryza sativa Os02g0115900 AF006825.1 - Endosperm lumenal binding protein 0 At5g42020 BIP2 C.G. S.X.
0.27 8e-33 141 Populus trichocarpa Ptp.288.1.A1_s_at DN484346 hypothetical protein - 6e-18 At5g42020 BIP2 C.G. S.X.
0.11 5e-12 71 Triticum aestivum Ta.21335.2.A1_x_at BJ250236 - - 2e-93 At5g42020 BIP2 C.G. S.X.
0.07 5e-16 83 Zea mays Zm.280.1.A1_at U58208.1 Binding protein homolog1 - 0 At5g42020 BIP2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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