Gene omics information

Query gene ID	1610996_at
Gene name	pectinesterase
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	80.6	1610996_at	BQ794786	pectinesterase	-	2e-9	At1g53840	ATPME1	S.X.	H.G.	Please select
0.18	19.4	1616299_at	CB979735	hypothetical LOC100241800	-	1e+0	At3g51440	strictosidine synthase family protein	S.X.	H.G.	Please select
0.16	16.7	1606781_at	BQ796322	hypothetical protein LOC100257470	-	5e-6	At5g45600	GAS41	S.X.	H.G.	Please select
0.13	13.3	1612103_at	CF212327	hypothetical protein LOC100249678	-	1e-150	At3g46440	UXS5	S.X.	H.G.	Please select
0.12	12.1	1620930_s_at	CF212327	hypothetical protein LOC100249678	-	1e-150	At3g46440	UXS5	S.X.	H.G.	Please select
0.07	7.8	1610668_at	CF405328	hypothetical protein LOC100264076	-	4e-6	At5g54390	AHL (ARABIDOPSIS HAL2-LIKE)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.8	99.0	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
5.8	98.6	GSM287893	Pink soft berry C12 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
5.6	98.4	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.5	98.4	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.4	98.3	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
5.1	98.1	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
5.0	98.0	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.7	97.7	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.5	97.5	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.4	97.3	GSM287884	Green soft berry C7 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-2	40	1610066_at	BQ798633	hypothetical protein LOC100265970	-	9e-2	At3g01700	AGP11	C.G.	S.X.	Please select
0.03	4e-2	38	1611650_at	CA808599	hypothetical protein LOC100244122	-	3e-26	At2g23320	WRKY15	C.G.	S.X.	Please select
0.02	2e-1	36	1621535_s_at	BQ792471	hypothetical protein LOC100247214	-	6e-87	At2g18020	EMB2296 (embryo defective 2296)	C.G.	S.X.	Please select
0.02	2e-1	36	1620621_at	CF519062	similar to nam-like protein	-	4e-33	At1g01720	ATAF1	C.G.	S.X.	Please select
0.02	2e-1	36	1617233_at	CF604441	hypothetical protein LOC100266540	-	1e+0	At3g18710	PUB29 (PLANT U-BOX 29)	C.G.	S.X.	Please select
0.01	6e-1	34	1620506_at	AF178989.1	-	-	2e+0	At1g11430	plastid developmental protein DAG, putative	C.G.	S.X.	Please select
0.02	6e-1	34	1611399_at	CA812238	hypothetical protein LOC100267710	-	2e+0	At2g45860	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1621951_at	BQ795175	hypothetical protein LOC100252259	-	3e-1	At5g38050	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1619208_at	CA814525	hypothetical protein LOC100248930	-	6e+0	At5g48950	thioesterase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	2e-9	63	Arabidopsis thaliana	At1g53840	841821	ATPME1	encodes a pectin methylesterase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	9e-16	85	Glycine max	GmaAffx.11502.1.S1_at	AW119616	-	-	2e-15	At1g53840	ATPME1	C.G.	S.X.	Please select
0.07	5e-15	81	Hordeum vulgare	Contig13318_at	Contig13318	-	-	1e-2	At3g59010	pectinesterase family protein	C.G.	S.X.	Please select
0.09	5e-18	93	Oryza sativa	Os01g0312500	AK105998.1	-	Pectin methylesterase isoform alpha (EC 3.1.1.11)(Fragment)	2e-2	At3g14310	ATPME3	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	5e-5	50	Populus trichocarpa	PtpAffx.119508.1.A1_at	CV226577	hypothetical protein	-	1e+0	At4g40011	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.16	2e-10	67	Triticum aestivum	TaAffx.65345.1.A1_at	BJ249481	-	-	2e+0	At1g23200	pectinesterase family protein	C.G.	S.X.	Please select
0.08	2e-5	50	Zea mays	Zm.12657.1.A1_at	CA826570	-	-	1e-1	At1g11580	PMEPCRA (METHYLESTERASE PCR A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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