Gene omics information

Query gene ID	1610939_at
Gene name	hypothetical protein LOC100240812
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	84.3	1610939_at	CF608429	hypothetical protein LOC100240812	-	5e-9	At3g05420	ACBP4 (ACYL-COA BINDING PROTEIN 4)	S.X.	H.G.	Please select
0.57	79.8	1607803_at	CB975690	hypothetical protein LOC100264130	-	7e-8	At1g20200	EMB2719 (EMBRYO DEFECTIVE 2719)	S.X.	H.G.	Please select
0.50	72.7	1619940_at	CF518701	hypothetical protein LOC100241361 /// hypothetical protein LOC100261422	-	3e-2	At2g32980	unknown protein	S.X.	H.G.	Please select
0.46	66.5	1618104_at	CA808387	hypothetical protein LOC100267860	-	1e+0	At3g43880	unknown protein	S.X.	H.G.	Please select
0.46	66.5	1609738_at	CF518474	similar to ZFWD1 (zinc finger WD40 repeat protein 1); nucleic acid binding / zinc ion binding	-	1e+0	At4g17565	F-box family protein	S.X.	H.G.	Please select
0.42	60.1	1614355_at	CF604126	-	-	7e-8	At1g12050	fumarylacetoacetase, putative	S.X.	H.G.	Please select
0.35	48.5	1608757_at	CB349275	hypothetical protein LOC100266172	-	3e-17	At5g14250	COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13)	S.X.	H.G.	Please select
0.34	46.8	1620795_at	CF214162	hypothetical protein LOC100255110	-	4e-40	At3g09630	60S ribosomal protein L4/L1 (RPL4A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.8	99.5	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
5.7	98.5	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.9	97.9	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.8	97.8	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.8	96.4	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.6	96.0	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.5	95.7	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.4	95.5	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-2	36	1618208_s_at	CF517158	hypothetical protein LOC100261805	-	8e-3	At5g21090	leucine-rich repeat protein, putative	C.G.	S.X.	Please select
0.03	3e-1	34	1615519_at	CA814334	-	-	2e+1	At5g22270	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	34	1613318_at	BQ799524	sucrose responsive element binding protein	-	2e-10	At4g37260	MYB73 (MYB DOMAIN PROTEIN 73)	C.G.	S.X.	Please select
0.02	3e-1	34	1606505_at	CB970568	hypothetical protein LOC100257948	-	3e+0	At3g21570	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	1622771_at	CF568860	-	-	2e-2	At1g72110	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	1620613_at	CF204549.1	-	-	5e-115	At1g70490	ARFA1D	C.G.	S.X.	Please select
0.03	1e+0	32	1619549_at	BQ797192	hypothetical protein LOC100250270	-	1e-3	At1g43620	UDP-glucose:sterol glucosyltransferase, putative	C.G.	S.X.	Please select
0.03	1e+0	32	1618107_at	CF403374	hypothetical protein LOC100263831	-	1e-7	At4g25650	ACD1-LIKE (ACD1-LIKE)	C.G.	S.X.	Please select
0.03	1e+0	32	1617319_at	CF373295	hypothetical protein LOC100246741	-	4e+0	Atcg00560	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-9	61	Arabidopsis thaliana	At3g05420	819707	ACBP4 (ACYL-COA BINDING PROTEIN 4)	Acyl-CoA binding protein with high affinity for oleoyl-CoA. Expressed in all plant organs. Involved in fatty acid transport.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	GmaAffx.58437.1.S1_at	BE802327	-	-	2e-1	At1g49520	SWIB complex BAF60b domain-containing protein	C.G.	S.X.	Please select
0.04	5e-1	34	Hordeum vulgare	EBem06_SQ002_J24_at	EBem06_SQ002_J24	-	-	8e-1	At2g43360	BIO2 (BIOTIN AUXOTROPH 2)	C.G.	S.X.	Please select
0.06	6e-7	56	Oryza sativa	Os03g0835600	AK101677.1	-	Acyl-coA-binding protein, ACBP family protein	9e-17	At3g05420	ACBP4 (ACYL-COA BINDING PROTEIN 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.209941.1.S1_x_at	pmrna19608	hypothetical protein	-	1e-3	At1g30100	NCED5 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	Ta.15418.1.S1_at	CA484424	-	-	2e-1	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	ZmAffx.1119.1.A1_at	AW267407	hypothetical protein LOC100272789	-	3e+0	At4g33625	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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