Gene omics information

Query gene ID	1610914_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	93.6	1610914_at	CF203251.1	-	-	3e+0	At4g04745	unknown protein	S.X.	H.G.	Please select
0.80	93.6	1616654_x_at	CF202840.1	-	-	2e+1	At4g01430	nodulin MtN21 family protein	S.X.	H.G.	Please select
0.77	92.3	1608259_at	CF205412.1	hypothetical protein LOC100255358	-	2e-6	At5g59520	ZIP2	S.X.	H.G.	Please select
0.71	89.5	1618607_s_at	CB972339	hypothetical protein LOC100255358	-	1e-3	At1g55910	ZIP11 (ZINC TRANSPORTER 11 PRECURSOR)	S.X.	H.G.	Please select
0.50	72.7	1616954_s_at	BQ794939	hypothetical protein LOC100252003	-	2e+1	At5g04470	SIM (SIAMESE)	S.X.	H.G.	Please select
0.36	50.7	1620683_at	CA811381	hypothetical protein LOC100245630	-	8e-9	At4g26160	ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.5	99.6	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
7.5	99.2	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
7.3	99.2	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
7.2	99.1	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
7.1	99.1	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.1	99.1	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
6.8	99.0	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
6.5	98.9	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
5.8	98.6	GSM436421	V. riparia (VR, PI588259) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
5.6	98.4	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-1	34	1615407_at	CA818445	hypothetical protein LOC100249436	-	5e-25	At5g59030	COPT1 (copper transporter 1)	C.G.	S.X.	Please select
0.05	2e-1	34	1609159_at	CF213225	hypothetical protein LOC100254544	-	4e-6	At1g56430	NAS4 (NICOTIANAMINE SYNTHASE 4)	C.G.	S.X.	Please select
0.02	8e-1	32	1621495_at	CF515274	hypothetical protein LOC100259742	-	2e-7	At3g52720	ACA1 (ALPHA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please select
0.02	8e-1	32	1615374_at	CB911656	hypothetical protein LOC100241955	-	8e-1	At1g34000	OHP2 (ONE-HELIX PROTEIN 2)	C.G.	S.X.	Please select
0.04	8e-1	32	1607852_at	CF373254	hypothetical protein LOC100249289 /// hypothetical protein LOC100264338 /// hypothetical protein LOC100265861	-	4e+0	At5g64650	ribosomal protein L17 family protein	C.G.	S.X.	Please select
0.04	3e+0	30	1620423_at	BQ794906	hypothetical protein LOC100251169	-	3e-1	At3g53710	AGD6	C.G.	S.X.	Please select
0.03	3e+0	30	1619368_at	CD721452	-	-	1e+0	At3g57100	unknown protein	C.G.	S.X.	Please select
0.04	3e+0	30	1619128_at	CD010950	-	-	1e+0	At5g45875	SCRL27 (SCR-Like 27)	C.G.	S.X.	Please select
0.03	3e+0	30	1617863_at	CA817296	hypothetical protein LOC100258796	-	4e-4	At5g20220	zinc knuckle (CCHC-type) family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e+0	32	Arabidopsis thaliana	At4g04745	825810	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	6e-5	48	Glycine max	GmaAffx.87905.1.S1_at	BU083616	-	-	2e-1	At5g59040	COPT3	C.G.	S.X.	Please select
0.04	1e+0	32	Hordeum vulgare	HK05D22r_x_at	HK05D22r	-	-	2e-1	At1g59835	unknown protein	C.G.	S.X.	Please select
0.08	2e-5	50	Oryza sativa	OsAffx.25224.1.A1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	3e-10	65	Populus trichocarpa	PtpAffx.204939.1.S1_at	pmrna9775	copper transporter	-	6e-2	At2g26975	copper transporter, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	1e-2	40	Triticum aestivum	Ta.25540.3.S1_x_at	CA692978	-	-	3e-3	At5g59030	COPT1 (copper transporter 1)	C.G.	S.X.	Please select
0.05	4e+0	30	Zea mays	ZmAffx.1523.1.S1_at	40794996-120	-	-	4e-9	Atmg01080	-	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage