CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1610845_at

Gene name hypothetical protein LOC100245365

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1610845_at CF208629 hypothetical protein LOC100245365 - 2e+0 At1g68030 PHD finger protein-related S.X. H.G.
0.67 87.9 1614871_s_at CF404051 hypothetical protein LOC100266189 - 7e-5 At4g32551 LUG (LEUNIG) S.X. H.G.
0.55 77.3 1606542_at BQ797856 hypothetical protein LOC100250325 - 1e+0 At2g10450 14-3-3 protein, putative / grf15, putative S.X. H.G.
0.40 57.7 1615636_at CB979153 hypothetical protein LOC100264871 - 5e+0 At5g63150 unknown protein S.X. H.G.
0.35 48.5 1622462_at CB916510 hypothetical protein LOC100265163 - 4e-23 At2g14740 ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3) S.X. H.G.
0.32 43.1 1606671_at CA809598 hypothetical protein LOC100262399 - 3e-21 At4g31580 SRZ-22 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.0 88.2 GSM436428 V. riparia (VR, PI588259) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM147681 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 10
1.9 87.2 GSM436429 V. riparia (VR, PI588259) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436427 V. riparia (VR, PI588259) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.8 86.0 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
1.8 86.0 GSM436407 V. riparia (VR, PI588259) LD, 15h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.6 83.3 GSM436412 V. riparia (VR, PI588259) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.6 83.3 GSM436424 V. riparia (VR, PI588259) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.6 83.3 GSM436406 V. riparia (VR, PI588259) LD, 15h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.6 83.3 GSM287885 Green soft berry A22 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-2 38 1613309_at CF512981 hypothetical protein LOC100266124 - 1e-2 At5g46840 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.02 1e-1 36 1621026_at CF519288 hypothetical protein LOC100242241 - 1e-22 At3g28480 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.03 1e-1 36 1618614_at CF404904 hypothetical protein LOC100260667 - 2e-5 At5g62100 ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2) C.G. S.X.
0.02 1e-1 36 1616868_at CB977238 hypothetical protein LOC100256467 - 3e-1 At3g52910 AtGRF4 (GROWTH-REGULATING FACTOR 4) C.G. S.X.
0.02 1e-1 36 1608427_at CF519288 - - 1e-22 At3g28480 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.02 2e+0 32 1621229_at CD008992 - - 3e-1 At1g03210 phenazine biosynthesis PhzC/PhzF family protein C.G. S.X.
0.02 2e+0 32 1615814_at CB920915 hypothetical protein LOC100264789 - 0 At3g04120 GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) C.G. S.X.
0.02 2e+0 32 1615383_at BQ793432 hypothetical protein LOC100256151 - 1e-3 At4g32272 - C.G. S.X.
0.02 2e+0 32 1608619_at CD008992 - - 3e-1 At1g03210 phenazine biosynthesis PhzC/PhzF family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Arabidopsis thaliana At1g68030 843131 PHD finger protein-related F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PFM - - - C.G. S.X.
0.03 2e-1 38 Glycine max GmaAffx.70067.1.S1_at BU091058 - - 8e-1 At5g44565 unknown protein C.G. S.X.
0.02 1e+1 30 Hordeum vulgare HK03P05r_at HK03P05r - - 4e-3 At2g35860 FLA16 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 PRECURSOR) C.G. S.X.
0.02 4e+0 34 Oryza sativa Os03g0346500 AK063139.1 - Hypothetical protein 3e-1 At1g70895 CLE17 (CLAVATA3/ESR-RELATED 17) C.G. S.X.
0.16 2e-10 67 Populus trichocarpa Ptp.6599.1.S1_at DN490284 hypothetical protein - 2e-1 At1g77800 PHD finger family protein C.G. S.X.
0.03 5e-1 36 Triticum aestivum TaAffx.28789.1.S1_at CA656207 - - 1e+0 At1g62900 O-methyltransferase, putative C.G. S.X.
0.03 1e+1 30 Zea mays ZmAffx.496.1.A1_at AI691675 - - 8e-1 At5g48580 FKBP15-2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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