Gene omics information

Query gene ID	1610833_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.88	95.4	1610833_at	CF414275	-	-	4e-3	At5g18920	unknown protein	S.X.	H.G.	Please select
0.63	84.3	1608904_at	CK138119.1	similar to F2D10.18	-	6e-9	At1g20696	HMGB3 (HIGH MOBILITY GROUP B 3)	S.X.	H.G.	Please select
0.59	80.6	1606938_at	CD802354	hypothetical protein LOC100265256	-	4e-72	At1g52740	HTA9 (HISTONE H2A PROTEIN 9)	S.X.	H.G.	Please select
0.57	79.8	1618133_at	CF404967	hypothetical protein LOC100259114	-	2e-1	At5g28610	-	S.X.	H.G.	Please select
0.56	79.4	1606676_at	CF403737	hypothetical protein LOC100245560	-	9e-2	At1g05060	unknown protein	S.X.	H.G.	Please select
0.54	75.7	1612905_s_at	CB345326	hypothetical protein LOC100258381	-	5e-3	At1g12830	unknown protein	S.X.	H.G.	Please select
0.54	75.7	1615091_at	CD801426	hypothetical protein LOC100242289	-	2e-2	At1g13770	-	S.X.	H.G.	Please select
0.54	75.7	1621197_at	CB971609	hypothetical protein LOC100258812	-	1e-56	At5g59910	HTB4	S.X.	H.G.	Please select
0.51	73.2	1619134_at	CB971759	-	-	2e+0	At5g53720	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.49	69.3	1611171_at	CD003897	hypothetical protein LOC100256369	-	6e-13	At3g52570	ATP binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.9	98.6	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
5.6	98.4	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
5.2	98.2	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
3.7	96.2	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
3.3	95.2	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
3.3	95.2	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
3.2	94.9	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
3.1	94.6	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
3.0	94.2	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
3.0	94.2	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-2	38	1612887_at	BQ798901	-	-	7e-5	At3g04890	unknown protein	C.G.	S.X.	Please select
0.02	7e-2	36	1612988_at	CB978708	hypothetical protein LOC100265359	-	6e-29	At5g21090	leucine-rich repeat protein, putative	C.G.	S.X.	Please select
0.03	3e-1	34	1610738_at	CB976949	hypothetical protein LOC100267811	-	2e-2	At5g27990	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	1622715_s_at	CA809281	hypothetical protein LOC100246378	-	3e-68	At1g12900	GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2)	C.G.	S.X.	Please select
0.01	1e+0	32	1622588_s_at	CF207335	hypothetical protein LOC100267071	-	0	At5g49460	ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2)	C.G.	S.X.	Please select
0.03	1e+0	32	1616466_at	CF213946	hypothetical protein LOC100242910	-	7e-3	At5g09430	hydrolase	C.G.	S.X.	Please select
0.03	1e+0	32	1614512_at	CF212309	-	-	4e-12	At4g39900	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	1612303_at	CB836999	-	-	1e+0	At5g63340	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	1611877_at	CF372971	hypothetical protein LOC100247278	-	4e-22	At2g31060	elongation factor family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	4e-3	42	Arabidopsis thaliana	At5g18920	832010	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-1	36	Glycine max	Gma.16552.1.A1_s_at	BE821185	-	-	3e+0	At1g54720	early-responsive to dehydration protein-related / ERD protein-related	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	Contig11608_s_at	Contig11608	-	-	1e-2	At5g18690	AGP25 (ARABINOGALACTAN PROTEINS 25)	C.G.	S.X.	Please select
0.04	5e-1	36	Oryza sativa	Os10g0339000	9638.m01625	-	-	9e-1	At5g65910	BSD domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.37	3e-20	99	Populus trichocarpa	PtpAffx.208349.1.S1_at	pmrna16598	hypothetical protein	-	8e-6	At5g18920	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	TaAffx.86349.1.S1_at	CA610621	-	-	2e-1	At5g55060	unknown protein	C.G.	S.X.	Please select
0.04	4e-1	34	Zea mays	ZmAffx.465.1.A1_at	AI677343	DTW domain containing protein	-	8e-1	At1g02450	NIMIN1 (NIM1-INTERACTING 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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