CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1610777_at

Gene name hypothetical protein LOC100263956

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1610777_at CD797701 hypothetical protein LOC100263956 - 2e-42 At3g13670 protein kinase family protein S.X. H.G.
0.67 87.9 1612774_at CF210198 hypothetical protein LOC100261536 - 2e+0 At5g40900 unknown protein S.X. H.G.
0.67 87.9 1619392_at CF513478 hypothetical protein LOC100259847 - 4e+0 At3g24060 self-incompatibility protein-related S.X. H.G.
0.57 79.8 1614838_at CB977099 hypothetical protein LOC100244335 - 1e-4 At1g43640 AtTLP5 (TUBBY LIKE PROTEIN 5) S.X. H.G.
0.43 61.5 1620627_at CF214379 hypothetical protein LOC100259195 - 1e-22 At1g20110 zinc finger (FYVE type) family protein S.X. H.G.
0.33 45.7 1614946_at CF510992 hypothetical protein LOC100258219 - 8e-64 At4g24820 26S proteasome regulatory subunit, putative (RPN7) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.6 96.0 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.5 95.7 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2 94.9 GSM299452 B_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.1 94.6 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM436372 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 32 1622101_at CB035816 - - 1e+0 At2g36010 E2F3 (E2F TRANSCRIPTION FACTOR 3) C.G. S.X.
0.02 1e+0 32 1621905_at CF414354 - - 4e-1 At3g11630 2-cys peroxiredoxin, chloroplast (BAS1) C.G. S.X.
0.03 1e+0 32 1618982_at CF413816 hypothetical protein LOC100264085 - 2e-2 At1g29390 COR314-TM2 C.G. S.X.
0.03 1e+0 32 1618306_at CF605844 hypothetical protein LOC100248583 - 1e+0 At2g36010 E2F3 (E2F TRANSCRIPTION FACTOR 3) C.G. S.X.
0.02 1e+0 32 1617227_at CD712927 - - 1e-1 At3g17350 unknown protein C.G. S.X.
0.04 1e+0 32 1614473_at CB007016 - - 3e-3 At4g26290 unknown protein C.G. S.X.
0.02 1e+0 32 1613403_at CD712927 - - 1e-1 At3g17350 unknown protein C.G. S.X.
0.04 1e+0 32 1610685_at CB007016 - - 3e-3 At4g26290 unknown protein C.G. S.X.
0.03 1e+0 32 1608075_at CA814201 hypothetical protein LOC100243451 - 2e-4 At4g01935 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 2e-42 173 Arabidopsis thaliana At3g13670 820572 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVA - - - C.G. S.X.
0.27 1e-56 220 Glycine max Gma.1066.1.S1_at BG363651 - - 4e-67 At3g13670 protein kinase family protein C.G. S.X.
0.12 4e-8 57 Hordeum vulgare Contig12162_at Contig12162 - - 2e-25 At2g25760 protein kinase family protein C.G. S.X.
0.18 7e-22 105 Oryza sativa Os01g0198200 NM_188260.1 - Casein kinase-like protein 2e-38 At2g25760 protein kinase family protein C.G. S.X.
0.30 6e-111 400 Populus trichocarpa PtpAffx.203642.1.S1_at pmrna7226 hypothetical protein - 4e-102 At3g13670 protein kinase family protein C.G. S.X.
0.23 2e-11 69 Triticum aestivum TaAffx.112058.1.S1_x_at CA627373 - - 1e-14 At3g13670 protein kinase family protein C.G. S.X.
0.14 7e-34 143 Zea mays Zm.5471.1.A1_at BG841029 hypothetical protein LOC100273539 - 3e-38 At3g13670 protein kinase family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage