Gene omics information

Query gene ID	1610728_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1610728_at	CA808724	-	-	1e-180	Atcg00800	-	S.X.	H.G.	Please select
0.67	87.9	AFFX-Vvi-X03453-2_s_at	-	-	-	0			S.X.	H.G.	Please select
0.67	87.9	AFFX-r2-P1-cre-3_at	AFFX-r2-P1-cre-3	-	-	0			S.X.	H.G.	Please select
0.67	87.9	AFFX-r2-P1-cre-5_at	AFFX-r2-P1-cre-5	-	-	0			S.X.	H.G.	Please select
0.61	83.2	AFFX-CreX-3_at	AFFX-CreX-3	-	-	0			S.X.	H.G.	Please select
0.55	77.3	1607580_s_at	AF501624.1	similar to histone H3 /// similar to histone H3	-	6e-87	At4g40040	histone H3.2	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.3	95.2	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9	87.2	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9	87.2	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9	87.2	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.8	86.0	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	1e-177	623	1622744_at	CF201679.1	similar to Os01g0789500 /// similar to ribosomal protein S3	-	2e-42	Atcg00820	-	C.G.	S.X.	Please select
0.23	1e-177	623	1613911_s_at	CF201679.1	similar to Os01g0789500 /// similar to ribosomal protein S3	-	2e-42	Atcg00820	-	C.G.	S.X.	Please select
0.09	1e-79	297	1617218_x_at	CF202349.1	-	-	6e+0	At3g23727	SCRL12 (SCR-Like 12)	C.G.	S.X.	Please select
0.09	1e-79	297	1612071_s_at	CF202349.1	-	-	6e+0	At3g23727	SCRL12 (SCR-Like 12)	C.G.	S.X.	Please select
0.03	1e-42	174	1622010_at	CF207538	similar to RNA polymerase alpha subunit	-	0	Atcg00740	-	C.G.	S.X.	Please select
0.03	1e-42	174	1614503_at	CB972598	-	-	0	Atcg00740	-	C.G.	S.X.	Please select
0.01	9e-3	42	1617154_at	CF404322	hypothetical protein LOC100248750	-	2e-42	At4g36130	60S ribosomal protein L8 (RPL8C)	C.G.	S.X.	Please select
0.01	1e-1	38	1612431_at	CA810329	-	-	1e+0	At2g16720	MYB7 (MYB DOMAIN PROTEIN 7)	C.G.	S.X.	Please select
0.01	6e-1	36	1620393_at	CB970191	-	-	2e+1	At5g66450	phosphatidic acid phosphatase-related / PAP2-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	1e-180	634	Arabidopsis thaliana	Atcg00800	-	-	encodes a chloroplast ribosomal protein S3, a constituent of the small subunit of the ribosomal complex	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.28	0	1031	Glycine max	GmaAffx.5291.1.S1_at	AW569952	-	-	1e-63	Atcg01310	-	C.G.	S.X.	Please select
0.16	9e-149	527	Hordeum vulgare	ChlorContig17_s_at	ChlorContig17	-	-	0	Atcg01310	-	C.G.	S.X.	Please select
0.18	3e-155	551	Oryza sativa	OsAffx.32199.1.A1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.34	0	1679	Populus trichocarpa	PtpAffx.18588.1.S1_at	CV271046	hypothetical protein	-	0	Atcg01310	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	2e-163	577	Triticum aestivum	TaAffx.128896.2.S1_at	BJ253515	-	-	1e-160	Atcg01310	-	C.G.	S.X.	Please select
0.20	0	640	Zea mays	ZmAffx.1498.1.S1_s_at	40794996-115	-	-	9e-147	Atcg01310	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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