CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1610645_at

Gene name hypothetical protein LOC100251896

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 80.6 1610645_at CD004549 hypothetical protein LOC100251896 - 2e-13 At1g61620 phosphoinositide binding S.X. H.G.
0.36 50.7 1619228_at BQ794778 hypothetical protein LOC100248533 - 8e-5 At3g12360 ITN1 (INCREASED TOLERANCE TO NACL) S.X. H.G.
0.36 50.7 1609250_at Y18471.1 SINA1p - 2e-60 At3g61790 seven in absentia (SINA) family protein S.X. H.G.
0.35 48.5 1615460_at CF405945 hypothetical protein LOC100249750 - 2e-91 At1g06700 serine/threonine protein kinase, putative S.X. H.G.
0.27 34.0 1620076_s_at CA809762 hypothetical protein LOC100254960 - 6e-15 At1g15270 - S.X. H.G.
0.25 30.5 1608021_at BQ796920 hypothetical protein LOC100250690 - 6e-1 At3g46620 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.9 93.8 GSM436359 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436379 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436378 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436356 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436381 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM322363 genotype: Chardonnay - disease type: Bois Noir infected - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.4 91.3 GSM436360 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436361 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436380 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436363 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 36 1615150_at CB973162 similar to 60S ribosomal protein L34 - 1e-34 At1g69620 RPL34 (RIBOSOMAL PROTEIN L34) C.G. S.X.
0.01 8e-1 34 1616981_at CB971105 phospholipase D alpha - 4e-52 At3g15730 PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1) C.G. S.X.
0.02 8e-1 34 1612300_at CD719418 - - 3e-1 At2g01800 COP1-interacting protein-related C.G. S.X.
0.02 8e-1 34 1611772_at AY427110.1 - - 9e+0 At5g18060 auxin-responsive protein, putative C.G. S.X.
0.02 8e-1 34 1611050_at AY427110.1 hypothetical protein LOC100246945 - 9e+0 At5g18060 auxin-responsive protein, putative C.G. S.X.
0.02 8e-1 34 1608506_at CD719418 - - 3e-1 At2g01800 COP1-interacting protein-related C.G. S.X.
0.01 3e+0 32 1622054_at CF215253 similar to GTP binding / translation initiation factor - 5e-44 At1g53900 GTP binding / translation initiation factor C.G. S.X.
0.02 3e+0 32 1619938_at CF514664 hypothetical protein LOC100254408 - 2e-1 At3g51950 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein C.G. S.X.
0.01 3e+0 32 1619955_at CF511247 hypothetical protein LOC100265296 - 1e-5 At3g15970 Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 2e-13 77 Arabidopsis thaliana At1g61620 842458 phosphoinositide binding F:phosphoinositide binding;P:signal transduction;C:unknown;MPFO - - - C.G. S.X.
0.36 2e-72 274 Glycine max GmaAffx.7159.1.S1_at AW310388 - - 1e-17 At1g61620 phosphoinositide binding C.G. S.X.
0.08 1e-9 63 Hordeum vulgare Contig7883_at Contig7883 - - 3e-18 At1g61620 phosphoinositide binding C.G. S.X.
0.09 4e-22 107 Oryza sativa Os03g0279900 AK061631.1 - Zn-finger, RING domain containing protein 2e-10 At1g61620 phosphoinositide binding C.G. S.X.
0.40 3e-68 260 Populus trichocarpa PtpAffx.2814.1.A1_at CV259420 hypothetical protein - 2e-9 At1g61620 phosphoinositide binding C.G. S.X.
0.07 1e-8 61 Triticum aestivum Ta.8142.1.S1_at BQ752849 - - 3e-15 At1g61620 phosphoinositide binding C.G. S.X.
0.07 1e-15 83 Zea mays Zm.17774.1.A1_at CK370354 nitric oxide synthase interacting protein - 4e-8 At1g61620 phosphoinositide binding C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage