Gene omics information

Query gene ID	1610632_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.54	75.7	1610632_at	CF208658	-	-	2e+0	Atmg00690	-	S.X.	H.G.	Please select
0.83	94.6	1606633_at	CD801002	-	-	2e+0	At2g42190	unknown protein	S.X.	H.G.	Please select
0.76	91.5	1614054_at	CF206745.1	-	-	4e-47	At2g27960	CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)	S.X.	H.G.	Please select
0.73	90.8	1616230_x_at	CF202354.1	-	-	2e+1	At5g43510	-	S.X.	H.G.	Please select
0.73	90.8	1615753_at	CF207576	-	-	2e-11	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	S.X.	H.G.	Please select
0.69	88.3	1609904_at	CF204988.1	hypothetical protein LOC100267206	-	4e-78	At5g61410	RPE	S.X.	H.G.	Please select
0.69	88.3	1618907_x_at	CF202612.1	-	-	4e+0	At5g17470	calmodulin-related protein, putative	S.X.	H.G.	Please select
0.67	87.9	1609907_x_at	CF201896.1	-	-	8e+0	At5g50345	-	S.X.	H.G.	Please select
0.63	84.3	1622826_x_at	CF202930.1	-	-	9e+0	At2g04845	GCN5-related N-acetyltransferase (GNAT) family protein	S.X.	H.G.	Please select
0.58	79.8	1609380_x_at	CF203033.1	-	-	8e-10	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.9	99.9	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
14.2	99.9	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
13.0	99.8	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
12.4	99.8	GSM147730	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	59
12.4	99.8	GSM147731	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	60
11.1	99.7	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
8.7	99.5	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
8.1	99.4	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
7.9	99.3	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
7.8	99.3	GSM147724	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	53

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	7e-3	38	1607509_at	CB971629	-	-	4e+0	At2g29310	tropinone reductase, putative / tropine dehydrogenase, putative	C.G.	S.X.	Please select
0.05	3e-2	36	1618145_at	CF515449	hypothetical protein LOC100260419	-	3e-1	At5g02230	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select
0.03	3e-2	36	1617998_at	BQ797178	R2R3 Myb transcription factor C2 repressor motif protein	-	6e-4	At2g16720	MYB7 (MYB DOMAIN PROTEIN 7)	C.G.	S.X.	Please select
0.04	3e-2	36	1617680_at	CD715051	-	-	2e-8	At1g51950	IAA18 (INDOLE-3-ACETIC ACID INDUCIBLE 18)	C.G.	S.X.	Please select
0.04	3e-2	36	1615330_at	CB339858	hypothetical protein LOC100247382	-	6e+0	At5g20520	WAV2 (WAVY GROWTH 2)	C.G.	S.X.	Please select
0.04	3e-2	36	1613857_at	CD715051	-	-	2e-8	At1g51950	IAA18 (INDOLE-3-ACETIC ACID INDUCIBLE 18)	C.G.	S.X.	Please select
0.04	1e-1	34	1619553_at	CB977614	hypothetical protein LOC100245623	-	9e-11	At1g13740	AFP2 (ABI FIVE BINDING PROTEIN 2)	C.G.	S.X.	Please select
0.10	1e-1	34	1618907_x_at	CF202612.1	-	-	4e+0	At5g17470	calmodulin-related protein, putative	C.G.	S.X.	Please select
0.04	1e-1	34	1618194_at	CF511293	hypothetical protein LOC100249674	-	4e-13	At3g52170	DNA binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	32	Arabidopsis thaliana	Atmg00690	-	-	hypothetical protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	1e-1	36	Glycine max	GmaAffx.86000.1.S1_at	BF426069	-	-	3e-1	At3g12760	-	C.G.	S.X.	Please select
0.05	7e-1	32	Hordeum vulgare	Contig17800_s_at	Contig17800	-	-	8e-2	At5g25750	unknown protein	C.G.	S.X.	Please select
0.05	1e-2	40	Oryza sativa	Os.10404.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e-1	36	Populus trichocarpa	PtpAffx.3543.1.A1_at	DN486360	-	-	6e-2	At1g04950	TAF6 (TBP-ASSOCIATED FACTOR 6)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	4e-1	34	Triticum aestivum	TaAffx.26007.1.S1_at	CA693241	-	-	8e-1	At1g51823	unknown protein	C.G.	S.X.	Please select
0.04	1e-2	38	Zea mays	Zm.17320.1.A1_at	CK348081	hypothetical protein LOC100277232	-	5e-3	At5g64905	PROPEP3 (Elicitor peptide 3 precursor)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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