Gene omics information

Query gene ID	1610618_at
Gene name	hypothetical protein LOC100264520
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.97	99.9	1610618_at	CB347516	hypothetical protein LOC100264520	-	3e-1	At5g62480	ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9)	S.X.	H.G.	Please select
0.37	51.7	1619219_at	CB968849	hypothetical protein LOC100249144	-	4e-34	At5g57360	ZTL (ZEITLUPE)	S.X.	H.G.	Please select
0.36	50.7	1622290_at	CB976463	hypothetical protein LOC100248560	-	3e-7	At1g76730	5-formyltetrahydrofolate cyclo-ligase family protein	S.X.	H.G.	Please select
0.29	37.7	1610186_at	CF207800	hypothetical protein LOC100261112	-	4e+0	At2g26547	unknown protein	S.X.	H.G.	Please select
0.28	37.7	1614197_at	CD721411	similar to catalytic	-	2e-55	At3g24180	catalytic/ glucosylceramidase	S.X.	H.G.	Please select
0.27	34.0	1613724_at	CB347931	hypothetical protein LOC100241678	-	6e-24	At5g58380	SIP1 (SOS3-INTERACTING PROTEIN 1)	S.X.	H.G.	Please select
0.26	32.0	1616877_at	BM437783	hypothetical protein LOC100261240	-	2e-15	At2g06010	ORG4 (OBP3-RESPONSIVE GENE 4)	S.X.	H.G.	Please select
0.26	32.0	1608774_at	CB007109	hypothetical protein LOC100262399	-	1e+1	At5g08190	NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12)	S.X.	H.G.	Please select
0.22	25.6	1618168_s_at	CA809565	hypothetical protein LOC100266379	-	4e-7	At2g18020	EMB2296 (embryo defective 2296)	S.X.	H.G.	Please select
0.22	25.6	1616411_at	CF518885	hypothetical protein LOC100241770	-	1e+0	At4g12735	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.1	99.5	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
6.2	98.8	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.9	97.9	GSM436410	V. riparia (VR, PI588259) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.7	97.7	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM287879	Green hard berry C19 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.4	95.5	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.4	95.5	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.4	95.5	GSM287886	Green soft berry C22 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.1	94.6	GSM147699	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	28

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	1e-12	71	1614718_at	CB347599	hypothetical protein LOC100264520	-	7e-11	At5g20700	senescence-associated protein-related	C.G.	S.X.	Please select
0.04	3e-1	34	1615516_at	CF511735	hypothetical protein LOC100255660	-	5e+0	At4g11760	LCR17 (Low-molecular-weight cysteine-rich 17)	C.G.	S.X.	Please select
0.03	1e+0	32	1621856_at	CF516490	hypothetical protein LOC100251400	-	2e-12	At1g51760	IAR3 (IAA-ALANINE RESISTANT 3)	C.G.	S.X.	Please select
0.03	5e+0	30	1618760_at	CF511611	hypothetical protein LOC100268141	-	1e+0	At2g03310	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	1614854_at	CD800421	-	-	4e+0	At4g05091	unknown protein	C.G.	S.X.	Please select
0.01	5e+0	30	1614479_at	BQ796528	arginine decarboxylase	-	6e-21	At2g16500	ADC1 (ARGININE DECARBOXYLASE 1)	C.G.	S.X.	Please select
0.03	5e+0	30	1613485_at	CF206102.1	-	-	3e-84	At1g21640	NADK2	C.G.	S.X.	Please select
0.02	5e+0	30	1613208_at	CF209522	hypothetical protein LOC100267894	-	8e-38	At1g16610	SR45	C.G.	S.X.	Please select
0.03	5e+0	30	1612152_at	CB347473	-	-	4e+0	At3g08490	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At5g62480	836368	ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.61027.1.S1_at	BU927542	-	-	9e-1	At3g62499	-	C.G.	S.X.	Please select
0.03	1e-1	36	Hordeum vulgare	Contig18002_at	Contig18002	-	-	3e-2	At5g65790	MYB68 (MYB DOMAIN PROTEIN 68)	C.G.	S.X.	Please select
0.03	8e+0	32	Oryza sativa	Os11g0564400	9639.m03226	-	-	9e-1	At2g20515	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	6e-3	42	Populus trichocarpa	Ptp.4905.2.S1_at	AI161496	-	-	1e+0	At5g42146	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	32	Triticum aestivum	TaAffx.119834.1.S1_at	BJ256148	-	-	4e+0	At5g59870	HTA6	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.1285.1.A1_at	AY111542.1	-	-	1e+0	At1g48745	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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