CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1610617_at

Gene name hypothetical protein LOC100258419

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1610617_at CB916396 hypothetical protein LOC100258419 - 6e-3 At2g41475 - S.X. H.G.
0.67 87.9 1612181_at CF518786 hypothetical protein LOC100241990 - 7e-6 At4g14100 transferase, transferring glycosyl groups S.X. H.G.
0.67 87.9 1621508_at CB005665 hypothetical protein LOC100260203 - 3e-20 At5g35180 phosphoinositide binding S.X. H.G.
0.55 77.3 1610742_at CB008464 similar to acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative - 1e-20 At5g48230 ACAT2 (ACETOACETYL-COA THIOLASE 2) S.X. H.G.
0.50 72.7 1609101_at CB921620 hypothetical protein LOC100252214 - 9e-31 At5g34850 PAP26 (PURPLE ACID PHOSPHATASE 26) S.X. H.G.
0.31 41.3 1619468_at AY043232.1 pectin methylesterase PME1 - 7e-8 At4g33220 enzyme inhibitor/ pectinesterase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.3 99.4 GSM287903 Red soft berry A7 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
7.7 99.3 GSM287891 Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
7.7 99.3 GSM287871 Green hard berry C4 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
7.5 99.2 GSM287883 Green soft berry A23 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
7.5 99.2 GSM287884 Green soft berry C7 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
7.4 99.2 GSM287887 Green soft berry C23 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
7.3 99.2 GSM287867 Green hard berry C1 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
7.1 99.1 GSM287902 Red soft berry C30 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
6.8 99.0 GSM287881 Green soft berry B10 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
6.8 99.0 GSM287886 Green soft berry C22 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-1 36 1614771_at CB346222 hypothetical protein LOC100242179 - 1e+0 At5g62200 embryo-specific protein-related C.G. S.X.
0.02 4e-1 34 1614254_at CD008037 - - 3e-1 At3g10980 unknown protein C.G. S.X.
0.02 4e-1 34 1610473_at CD008037 hypothetical protein LOC100259805 - 3e-1 At3g10980 unknown protein C.G. S.X.
0.02 2e+0 32 1621229_at CD008992 - - 3e-1 At1g03210 phenazine biosynthesis PhzC/PhzF family protein C.G. S.X.
0.02 2e+0 32 1617832_s_at CD801140 hypothetical protein LOC100268022 - 2e-2 At5g06980 unknown protein C.G. S.X.
0.02 2e+0 32 1615023_at BQ793087 hypothetical protein LOC100257110 - 5e+0 At5g13780 GCN5-related N-acetyltransferase, putative C.G. S.X.
0.02 2e+0 32 1609078_a_at BQ794194 hypothetical protein LOC100251960 - 3e-1 At4g27120 unknown protein C.G. S.X.
0.02 2e+0 32 1608619_at CD008992 - - 3e-1 At1g03210 phenazine biosynthesis PhzC/PhzF family protein C.G. S.X.
0.02 2e+0 32 1607709_at CD800900 hypothetical protein LOC100259955 - 7e-3 At3g58260 meprin and TRAF homology domain-containing protein / MATH domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 6e-3 42 Arabidopsis thaliana At2g41475 6240499 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P - - - C.G. S.X.
0.06 1e-4 48 Glycine max Gma.10752.2.S1_at AW101759 - - 4e-1 At4g02550 unknown protein C.G. S.X.
0.03 2e-1 36 Hordeum vulgare Contig24303_at Contig24303 - - 3e-1 At3g09800 protein binding C.G. S.X.
0.03 3e+0 34 Oryza sativa Os01g0194400 9629.m00931 - - 2e-3 At3g58510 DEAD box RNA helicase, putative (RH11) C.G. S.X.
0.10 1e-7 57 Populus trichocarpa PtpAffx.30839.1.A1_at CV259302 hypothetical protein - 3e-1 At2g41475 - C.G. S.X.
0.03 4e-1 36 Triticum aestivum TaAffx.109599.1.S1_x_at CA672347 - - 4e+0 At3g17580 unknown protein C.G. S.X.
0.03 6e-1 34 Zea mays Zm.6944.4.A1_a_at AW498023 actin-1 - 4e-31 At5g09810 ACT7 (ACTIN 7) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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