CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1610600_at

Gene name hypothetical protein LOC100242774 /// hypothetical protein LOC100248732 /// hypothetical protein LOC100253829

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1610600_at CA813949 hypothetical protein LOC100242774 /// hypothetical protein LOC100248732 /// hypothetical protein LOC100253829 - 3e-1 At3g08580 AAC1 (ADP/ATP CARRIER 1) S.X. H.G.
0.73 90.8 1613603_at CF211665 hypothetical protein LOC100248706 - 1e-7 At1g47670 amino acid transporter family protein S.X. H.G.
0.61 83.2 1613837_at CF605759 hypothetical protein LOC100248706 - 4e-4 At1g47670 amino acid transporter family protein S.X. H.G.
0.50 72.7 1617483_at CD799044 hypothetical protein LOC100267019 - 1e+0 At2g04170 meprin and TRAF homology domain-containing protein / MATH domain-containing protein S.X. H.G.
0.46 66.5 1609744_at CF203760.1 hypothetical protein LOC100240811 /// hypothetical protein LOC100263073 - 2e+0 At3g42630 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.23 27.5 1609397_at CF512090 hypothetical protein LOC100248717 - 1e-35 At5g64300 ATGCH S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
30.5 100.0 GSM299456 C_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
28.7 100.0 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
17.8 99.9 GSM299454 B_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
15.0 99.9 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.9 99.5 GSM299460 D_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.8 99.3 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.8 99.3 GSM147681 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 10
5.7 98.5 GSM299458 D_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.0 98.0 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.8 97.8 GSM299452 B_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-5 48 1612432_at CA818379 hypothetical protein LOC100261638 - 5e+0 At1g17200 integral membrane family protein C.G. S.X.
0.03 1e+0 32 1612546_at CF405802 hypothetical protein LOC100265585 - 6e-2 At3g47520 MDH (MALATE DEHYDROGENASE) C.G. S.X.
0.04 1e+0 32 1611573_at CA814281 similar to KEA1 (K EFFLUX ANTIPORTER 1); potassium:hydrogen antiporter - 1e-18 At1g01790 KEA1 (K EFFLUX ANTIPORTER 1) C.G. S.X.
0.02 1e+0 32 1610724_at CB916342 hypothetical protein LOC100262718 - 2e-66 At1g18270 ketose-bisphosphate aldolase class-II family protein C.G. S.X.
0.02 5e+0 30 1622469_at CF202453.1 - - 6e+0 At5g23160 unknown protein C.G. S.X.
0.03 5e+0 30 1621874_x_at CF204991.1 - - 2e-23 At5g52240 MSBP1 (membrane steroid binding protein 1) C.G. S.X.
0.03 5e+0 30 1620723_at CF204991.1 - - 2e-23 At5g52240 MSBP1 (membrane steroid binding protein 1) C.G. S.X.
0.02 5e+0 30 1618700_at CF609905 - - 8e-15 At1g77680 ribonuclease II family protein C.G. S.X.
0.03 5e+0 30 1618400_at CF371776 hypothetical protein LOC100267848 - 2e-1 At5g66680 DGL1 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-1 36 Arabidopsis thaliana At3g08580 820005 AAC1 (ADP/ATP CARRIER 1) mitochondrial ADP/ATP carrier - - - C.G. S.X.
0.03 6e+0 32 Glycine max PsAffx.psHB024xI22f_at PsAffx.psHB024xI22f - - 2e-2 At4g24026 unknown protein C.G. S.X.
0.04 8e+0 30 Hordeum vulgare rbags16o16_s_at rbags16o16 - - 8e+0 At5g50270 F-box family protein C.G. S.X.
0.04 5e-1 36 Oryza sativa Os07g0622900 AK059960.1 - Conserved hypothetical protein 2e+0 At4g02430 pre-mRNA splicing factor, putative / SR1 protein, putative C.G. S.X.
0.04 1e+0 34 Populus trichocarpa PtpAffx.61275.1.A1_at DN486703 - - 6e-1 At4g09270 unknown protein C.G. S.X.
0.03 4e+0 32 Triticum aestivum TaAffx.64012.1.A1_at BJ319180 - - 1e+1 At5g23600 tRNA 2'phosphotransferase, putative C.G. S.X.
0.04 1e-1 36 Zea mays ZmAffx.20.1.A1_at AI600385 - - 3e+0 At4g02550 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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