Gene omics information

Query gene ID	1610591_at
Gene name	hypothetical protein LOC100251627
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	81.9	1610591_at	CB923320	hypothetical protein LOC100251627	-	1e-5	At2g46370	JAR1 (JASMONATE RESISTANT 1)	S.X.	H.G.	Please select
0.55	77.3	1621277_at	CF369061	hypothetical protein LOC100252641	-	2e-24	At1g72820	mitochondrial substrate carrier family protein	S.X.	H.G.	Please select
0.52	73.9	1617361_at	CF404356	hypothetical protein LOC100244017	-	3e-50	At4g35630	PSAT	S.X.	H.G.	Please select
0.52	73.9	1607804_at	CB004035	-	-	2e-45	At1g16270	protein kinase family protein	S.X.	H.G.	Please select
0.50	72.7	1611428_at	CD797261	hypothetical protein LOC100242068	-	1e+0	At5g48470	unknown protein	S.X.	H.G.	Please select
0.50	72.7	1620725_at	BQ795649	hypothetical protein LOC100249240	-	4e-1	At4g37445	-	S.X.	H.G.	Please select
0.36	50.7	1615778_at	BQ792775	hypothetical protein LOC100253193	-	1e-3	At2g42670	unknown protein	S.X.	H.G.	Please select
0.28	37.7	1615660_at	CF215672	similar to UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase	-	1e-51	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.5	99.7	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
11.0	99.7	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
9.5	99.6	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.9	99.5	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.6	99.5	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.5	99.2	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.5	99.2	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.1	99.1	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.9	99.1	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.3	98.8	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	36	1622316_at	CD004551	hypothetical protein LOC100244251	-	2e-2	At1g64950	CYP89A5	C.G.	S.X.	Please select
0.02	2e-1	36	1607600_at	CF202470.1	-	-	4e-1	At1g21110	O-methyltransferase, putative	C.G.	S.X.	Please select
0.02	9e-1	34	1617804_at	CF204821.1	-	-	3e+0	At5g65340	unknown protein	C.G.	S.X.	Please select
0.02	9e-1	34	1608537_at	CB001610	-	-	5e-1	At4g13690	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	1622766_at	CF209938	hypothetical protein LOC100240939	-	3e-127	At1g09430	ACLA-3	C.G.	S.X.	Please select
0.01	3e+0	32	1622468_at	CF512400	-	-	4e-51	Atcg01120	-	C.G.	S.X.	Please select
0.01	3e+0	32	1621094_s_at	CF214762	similar to AT4g27960	-	1e-72	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	C.G.	S.X.	Please select
0.01	3e+0	32	1620256_at	AF021808.1	sucrose transporter-like	-	2e-29	At1g09960	SUT4 (SUCROSE TRANSPORTER 4)	C.G.	S.X.	Please select
0.01	3e+0	32	1620040_at	CD715189	-	-	4e-16	Atcg00900	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-5	52	Arabidopsis thaliana	At2g46370	819244	JAR1 (JASMONATE RESISTANT 1)	Encodes a jasmonate-amido synthetase that is a member of the GH3 family of proteins. JAR1 catalyzes the formation of a biologically active jasmonyl-isoleucine (JA-Ile) conjugate. JA-Ile promotes the interaction between JAZ1 and COI1 in the jasmonate signaling pathway. JAR1 localizes to the cytoplasm and is also a phytochrome A signaling component. JAR1 is an auxin-induced gene. Loss of function mutants are defective in a variety of responses to jasmonic acid. JAR1 has additional enzymatic activities in vitro, (e.g. the ability to synthesize adenosine 5'-tetraphosphate and other JA conjugates), but there are no data to show whether JAR1 catalyzes many of these reactions in vivo. JAR1 is involved in pathogen defense, sensitivity to ozone, and wound responses.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	1e-24	115	Glycine max	Gma.2677.1.S1_at	CA937161	-	-	8e-7	At2g46370	JAR1 (JASMONATE RESISTANT 1)	C.G.	S.X.	Please select
0.02	4e-1	36	Hordeum vulgare	Contig8733_at	Contig8733	-	-	2e-9	At5g09920	NRPB4	C.G.	S.X.	Please select
0.06	2e-8	61	Oryza sativa	Os.34283.3.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	9e-60	232	Populus trichocarpa	Ptp.6069.1.S1_a_at	CK093943	GH3 family protein	-	2e-7	At2g46370	JAR1 (JASMONATE RESISTANT 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	1e-5	52	Triticum aestivum	TaAffx.28494.1.S1_s_at	CD903785	-	-	1e-3	At2g46370	JAR1 (JASMONATE RESISTANT 1)	C.G.	S.X.	Please select
0.03	1e-3	44	Zea mays	Zm.2641.1.A1_at	AW066658	hypothetical protein LOC100193303	-	1e-1	At2g47750	GH3.9 (PUTATIVE INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.9)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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