CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1610567_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 83.2 1610567_at CF212759 - - 3e-5 At3g48185 unknown protein S.X. H.G.
0.61 83.2 1616521_at AF196485.1 beta-tubulin - 9e-56 At5g62700 TUB3 S.X. H.G.
0.59 80.6 1613351_at CB972999 hypothetical protein LOC100252023 - 2e-1 At5g12970 C2 domain-containing protein S.X. H.G.
0.57 79.8 1608586_at CF514688 hypothetical protein LOC100241814 - 4e-18 At4g21960 PRXR1 S.X. H.G.
0.54 75.7 1614917_at CF372079 hypothetical protein LOC100267340 - 4e+0 At5g60660 PIP2 S.X. H.G.
0.48 68.8 1609302_at CB979609 similar to somatic embryogenesis receptor kinase - 7e-14 At1g34210 SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2) S.X. H.G.
0.46 66.5 1613373_at BM437091 hypothetical protein LOC100245626 - 5e-7 At3g25500 AFH1 (FORMIN HOMOLOGY 1) S.X. H.G.
0.41 58.7 1617440_at CF373136 hypothetical protein LOC100247017 - 8e-2 At5g61470 zinc finger (C2H2 type) family protein S.X. H.G.
0.40 57.7 1608829_at CD802477 hypothetical protein LOC100258592 - 9e-24 At4g03415 catalytic/ protein serine/threonine phosphatase S.X. H.G.
0.39 54.9 1611516_at CB008162 hypothetical protein LOC100262734 - 2e-5 At3g28690 protein kinase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.2 98.8 GSM436388 V. riparia (VR, PI588259) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.6 97.6 GSM436401 V. riparia (VR, PI588259) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.4 97.3 GSM436392 V. riparia (VR, PI588259) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.3 97.2 GSM436390 V. riparia (VR, PI588259) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
4.1 96.9 GSM436396 V. riparia (VR, PI588259) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
4.0 96.7 GSM436403 V. riparia (VR, PI588259) LD, 15h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.9 96.6 GSM436415 V. riparia (VR, PI588259) SD, 13h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.9 96.6 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM436405 V. riparia (VR, PI588259) LD, 15h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.4 95.5 GSM436410 V. riparia (VR, PI588259) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-1 36 1621744_at CF510924 hypothetical protein LOC100252902 - 5e-53 At5g27430 signal peptidase subunit family protein C.G. S.X.
0.02 1e-1 36 1620284_at CA817004 hypothetical protein LOC100249470 - 1e-17 At4g35220 cyclase family protein C.G. S.X.
0.03 1e-1 36 1618366_a_at CF208481 - - 1e+0 At4g13440 calcium-binding EF hand family protein C.G. S.X.
0.03 1e-1 36 1612599_at CB346782 hypothetical protein LOC100265811 - 3e-4 At2g25720 unknown protein C.G. S.X.
0.03 4e-1 34 1621853_at CA809007 hypothetical protein LOC100262402 - 1e+0 At1g77520 O-methyltransferase family 2 protein C.G. S.X.
0.02 4e-1 34 1620278_at CD798169 hypothetical protein LOC100255447 - 2e-4 At4g13620 AP2 domain-containing transcription factor, putative C.G. S.X.
0.02 4e-1 34 1617204_at CF404742 hypothetical protein LOC100264070 - 2e-21 At2g33800 ribosomal protein S5 family protein C.G. S.X.
0.03 4e-1 34 1616382_at CF568793 - - 1e+0 At5g26673 - C.G. S.X.
0.03 4e-1 34 1612905_s_at CB345326 hypothetical protein LOC100258381 - 5e-3 At1g12830 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e-5 50 Arabidopsis thaliana At3g48185 823974 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.05 1e-4 48 Glycine max GmaAffx.87414.1.S1_at BG405164 - - 2e-1 At5g03090 unknown protein C.G. S.X.
0.04 2e-1 36 Hordeum vulgare HF21N04r_at HF21N04r - - 2e+0 At4g19150 ankyrin repeat family protein C.G. S.X.
0.03 2e-1 38 Oryza sativa Os05g0164600 9633.m00646 - - 9e-1 At2g28440 proline-rich family protein C.G. S.X.
0.04 3e-2 40 Populus trichocarpa PtpAffx.89247.1.A1_at CV232113 - - 4e-2 At5g37860 copper-binding family protein C.G. S.X.
0.04 1e-1 38 Triticum aestivum TaAffx.51997.1.S1_at CA715004 - - 2e-1 At3g05170 phosphoglycerate/bisphosphoglycerate mutase family protein C.G. S.X.
0.02 2e-1 36 Zea mays Zm.16530.1.A1_at BM953023 - - 3e-51 At3g52590 UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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