Gene omics information

Query gene ID	1610556_at
Gene name	hypothetical protein LOC100250209
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.88	95.4	1610556_at	CF415554	hypothetical protein LOC100250209	-	4e+0	At5g23950	C2 domain-containing protein	S.X.	H.G.	Please select
0.53	75.2	1619013_at	CF514808	hypothetical protein LOC100242671	-	3e-32	At1g03260	-	S.X.	H.G.	Please select
0.50	72.7	1618759_at	CB348270	hypothetical protein LOC100256813	-	1e+0	At1g76010	nucleic acid binding	S.X.	H.G.	Please select
0.46	66.5	1615516_at	CF511735	hypothetical protein LOC100255660	-	5e+0	At4g11760	LCR17 (Low-molecular-weight cysteine-rich 17)	S.X.	H.G.	Please select
0.43	61.5	1619715_at	CF207152	hypothetical protein LOC100243011	-	5e-39	At1g30470	SIT4 phosphatase-associated family protein	S.X.	H.G.	Please select
0.41	58.7	1608302_at	BQ792683	hypothetical protein LOC100253708	-	4e-3	At4g26750	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.39	54.9	1610189_at	CF211002	hypothetical protein LOC100257691	-	4e+0	At5g47830	unknown protein	S.X.	H.G.	Please select
0.38	53.6	1615804_at	CF403733	-	-	4e-2	At5g65910	BSD domain-containing protein	S.X.	H.G.	Please select
0.37	51.7	1614009_at	BQ797920	hypothetical protein LOC100242045	-	4e-19	At1g14000	VIK (VH1-INTERACTING KINASE)	S.X.	H.G.	Please select
0.37	51.7	1616468_at	BQ797683	hypothetical protein LOC100246828	-	5e-66	At1g63830	proline-rich family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.5	95.7	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.3	90.7	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	34	1619213_at	CK136965.1	-	-	1e+1	At5g47520	AtRABA5a (Arabidopsis Rab GTPase homolog A5a)	C.G.	S.X.	Please select
0.03	3e-1	34	1615962_at	CF512264	hypothetical protein LOC100256456	-	3e-22	At2g44690	ARAC9	C.G.	S.X.	Please select
0.01	3e-1	34	1609211_at	BQ795995	hypothetical protein LOC100250808	-	6e-5	At2g33490	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.02	1e+0	32	1622571_at	CB970577	hypothetical protein LOC100255631	-	3e-11	At2g21230	bZIP family transcription factor	C.G.	S.X.	Please select
0.03	1e+0	32	1621514_at	CB915597	-	-	1e-1	At3g42800	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	1620462_at	CD801647	hypothetical protein LOC100259215	-	4e+0	At5g37870	seven in absentia (SINA) family protein	C.G.	S.X.	Please select
0.03	1e+0	32	1618614_at	CF404904	hypothetical protein LOC100260667	-	2e-5	At5g62100	ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2)	C.G.	S.X.	Please select
0.02	1e+0	32	1614298_at	CF403239	hypothetical protein LOC100256505	-	7e-40	At1g08465	YAB2 (YABBY2)	C.G.	S.X.	Please select
0.03	1e+0	32	1613886_at	BQ796226	hypothetical protein LOC100257655	-	4e+0	At4g08570	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At5g23950	832460	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	9e-2	38	Glycine max	HgAffx.4671.1.S1_at	CD748747	-	-	6e-1	At5g65860	ankyrin repeat family protein	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	Contig4489_s_at	Contig4489	-	-	3e+0	At2g29525	-	C.G.	S.X.	Please select
0.05	5e-1	36	Oryza sativa	OsAffx.20853.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e-1	36	Populus trichocarpa	PtpAffx.210395.1.S1_at	pmrna20429	hypothetical protein	-	4e-1	At1g69690	TCP family transcription factor, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	TaAffx.52845.1.S1_at	CA699901	-	-	1e+1	At4g30670	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	ZmAffx.750.1.A1_at	AI677184	hypothetical protein LOC100275058	-	9e-1	At5g16200	50S ribosomal protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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