Gene omics information

Query gene ID	1610514_at
Gene name	ripening induced protein
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1610514_at	AF176655.1	ripening induced protein	-	2e-1	At4g33750	-	S.X.	H.G.	Please select
0.80	93.6	1613388_at	CF568873	-	-	1e-9	At4g25370	Clp amino terminal domain-containing protein	S.X.	H.G.	Please select
0.53	75.2	1607083_at	CB002933	-	-	4e+0	At3g17950	unknown protein	S.X.	H.G.	Please select
0.50	72.7	1614270_at	CD010750	-	-	3e-20	At3g07670	SET domain-containing protein	S.X.	H.G.	Please select
0.40	57.7	1622413_at	CD714494	-	-	3e-1	At4g39070	zinc finger (B-box type) family protein	S.X.	H.G.	Please select
0.20	22.4	1618102_at	CF415084	-	-	7e-37	At2g18710	SCY1 (SecY Homolog 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.3	98.2	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
5.2	98.2	GSM147695	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	24
4.7	97.7	GSM147673	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	2
4.4	97.3	GSM147676	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	5
4.0	96.7	GSM147690	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	19
3.8	96.4	GSM147692	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	21
3.4	95.5	GSM147684	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	13
3.3	95.2	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	682	1606688_at	AF176655.1	ripening induced protein	-	2e-1	At4g33750	-	C.G.	S.X.	Please select
0.54	1e-132	470	1616455_s_at	BQ792207	hypothetical protein LOC100250281	-	4e-1	At4g33750	-	C.G.	S.X.	Please select
0.59	1e-39	161	1617968_at	CB345331	-	-	1e+0	At3g05600	epoxide hydrolase, putative	C.G.	S.X.	Please select
0.50	7e-26	115	1618820_x_at	CF204114.1	-	-	9e-2	At1g34350	unknown protein	C.G.	S.X.	Please select
0.50	7e-26	115	1607139_at	CF204114.1	-	-	9e-2	At1g34350	unknown protein	C.G.	S.X.	Please select
0.30	2e-16	83	1609150_x_at	CF206331.1	-	-	1e+1	At5g19240	unknown protein	C.G.	S.X.	Please select
0.29	9e-16	81	1608322_x_at	CF205688.1	-	-	7e-1	At5g10890	myosin heavy chain-related	C.G.	S.X.	Please select
0.24	4e-15	79	1618082_at	CB345783	-	-	9e-1	At3g06700	60S ribosomal protein L29 (RPL29A)	C.G.	S.X.	Please select
0.11	3e-9	59	1613459_at	BQ798130	hypothetical protein LOC100250844	-	6e-6	At4g29660	EMB2752 (EMBRYO DEFECTIVE 2752)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	2e-1	36	Arabidopsis thaliana	At4g33750	-	-	-	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	1e-12	73	Glycine max	Gma.2044.2.S1_at	BE821230	abscisic stress ripening-like protein	-	6e-1	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	C.G.	S.X.	Please select
0.09	5e-6	50	Hordeum vulgare	Contig20720_at	Contig20720	-	-	1e+0	At3g44140	unknown protein	C.G.	S.X.	Please select
0.08	2e-5	50	Oryza sativa	Os01g0959200	AU100845	-	Abscisic stress ripening protein 1	1e+0	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	2e-11	69	Populus trichocarpa	PtpAffx.40421.3.A1_at	CV255594	hypothetical protein	-	3e-1	At4g12860	UNE14 (unfertilized embryo sac 14)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	5e-8	57	Triticum aestivum	Ta.17877.1.S1_at	CA625253	-	-	6e-2	At1g62240	unknown protein	C.G.	S.X.	Please select
0.10	2e-8	57	Zea mays	Zm.15084.1.A1_at	BM350611	-	-	6e-2	At1g62240	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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