Gene omics information

Query gene ID	1610493_at
Gene name	hypothetical protein LOC100242667
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1610493_at	BQ799159	hypothetical protein LOC100242667	-	5e-47	At5g27720	emb1644 (embryo defective 1644)	S.X.	H.G.	Please select
0.73	90.8	1607618_at	CB920876	hypothetical protein LOC100263508	-	3e-2	At3g14160	oxidoreductase	S.X.	H.G.	Please select
0.61	83.2	1607012_a_at	CF415679	similar to glucose-6-phosphate isomerase	-	1e+0	At4g08867	unknown protein	S.X.	H.G.	Please select
0.31	41.3	1612176_at	CF212948	hypothetical protein LOC100250907	-	5e-23	At3g17940	aldose 1-epimerase family protein	S.X.	H.G.	Please select
0.27	34.0	1621906_s_at	CF205801.1	hypothetical protein LOC100258001	-	7e+0	Atcg00440	-	S.X.	H.G.	Please select
0.23	27.5	1616476_at	CB340892	hypothetical protein LOC100252961	-	4e-13	At4g01710	CRK (CROOKED)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.6	96.0	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.4	95.5	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.3	95.2	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.1	94.6	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.0	94.2	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.0	94.2	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.0	94.2	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287890	Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-2	38	1617695_at	CF514710	-	-	1e+0	At1g28290	AGP31 (arabinogalactan-protein 31)	C.G.	S.X.	Please select
0.03	3e-2	38	1610948_at	CB344798	-	-	5e-1	At1g78450	SOUL heme-binding family protein	C.G.	S.X.	Please select
0.03	1e-1	36	1619735_at	CF208486	hypothetical protein LOC100258926	-	1e-34	At2g15430	NRPB3	C.G.	S.X.	Please select
0.02	1e-1	36	1619101_at	CB975563	hypothetical protein LOC100248761	-	4e-13	At1g04850	ubiquitin-associated (UBA)/TS-N domain-containing protein	C.G.	S.X.	Please select
0.01	5e-1	34	1621771_at	CB348522	40S ribosomal protein SA	-	1e-110	At1g72370	P40	C.G.	S.X.	Please select
0.02	5e-1	34	1621160_at	CF208890	-	-	2e-1	At5g24250	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	1619657_at	CD719074	-	-	1e-1	At1g53650	CID8 (CTC-INTERACTING DOMAIN 8)	C.G.	S.X.	Please select
0.02	5e-1	34	1617848_at	CB346603	hypothetical protein LOC100253668 /// hypothetical LOC100267244	-	2e-6	At2g28490	cupin family protein	C.G.	S.X.	Please select
0.02	5e-1	34	1616363_at	CB969159	similar to mitochondrial carrier protein	-	3e-5	At5g46800	BOU (A BOUT DE SOUFFLE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.31	5e-47	188	Arabidopsis thaliana	At5g27720	832834	emb1644 (embryo defective 1644)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:small nucleolar ribonucleoprotein complex, nucleus;MFOPBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.30	1e-69	264	Glycine max	Gma.420.1.S1_at	AW348657	-	-	5e-50	At5g27720	emb1644 (embryo defective 1644)	C.G.	S.X.	Please select
0.22	2e-14	79	Hordeum vulgare	Contig8014_at	Contig8014	-	-	8e-37	At5g27720	emb1644 (embryo defective 1644)	C.G.	S.X.	Please select
0.21	2e-17	91	Oryza sativa	Os01g0256900	AK100819.1	-	SmX6 protein	5e-38	At5g27720	emb1644 (embryo defective 1644)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.34	8e-96	351	Populus trichocarpa	Ptp.4889.1.S1_s_at	BU835677	hypothetical protein	-	1e-50	At5g27720	emb1644 (embryo defective 1644)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	4e-20	99	Triticum aestivum	Ta.3949.1.S1_at	CA692624	-	-	1e-35	At5g27720	emb1644 (embryo defective 1644)	C.G.	S.X.	Please select
0.28	7e-29	127	Zea mays	Zm.3350.1.A1_a_at	BM266649	U6 snRNA-associated Sm-like protein LSm4	-	4e-29	At5g27720	emb1644 (embryo defective 1644)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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