Gene omics information

Query gene ID	1610473_at
Gene name	hypothetical protein LOC100259805
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.78	92.6	1610473_at	CD008037	hypothetical protein LOC100259805	-	3e-1	At3g10980	unknown protein	S.X.	H.G.	Please select
0.40	57.7	1611092_at	CF208653	-	-	3e-1	At3g51890	protein binding / structural molecule	S.X.	H.G.	Please select
0.40	57.7	1618465_at	CB918507	hypothetical protein LOC100252099	-	2e-39	At5g14640	SK13 (SHAGGY-LIKE KINASE 13)	S.X.	H.G.	Please select
0.36	50.7	1609974_at	CB977877	hypothetical protein LOC100267017	-	2e-61	At4g26610	D6PKL1 (D6 PROTEIN KINASE LIKE 1)	S.X.	H.G.	Please select
0.36	50.7	1620375_at	CA814054	hypothetical protein LOC100252099	-	3e-13	At3g05840	ATSK12	S.X.	H.G.	Please select
0.33	45.7	1607428_at	CD801140	hypothetical protein LOC100268022	-	2e-2	At5g06980	unknown protein	S.X.	H.G.	Please select
0.13	13.3	1611922_at	CD799103	hypothetical protein LOC100245782	-	2e-1	At3g49770	unknown protein	S.X.	H.G.	Please select
0.07	7.8	1619464_at	CA818609	hypothetical protein LOC100254564	-	3e-11	At1g79160	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.4	98.9	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
5.2	98.2	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
5.0	98.0	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.9	97.9	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.7	97.7	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.1	96.9	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.1	96.9	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.1	96.9	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.8	96.4	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.8	96.4	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1235	1614254_at	CD008037	-	-	3e-1	At3g10980	unknown protein	C.G.	S.X.	Please select
0.02	2e-3	42	1622296_at	CF514744	hypothetical protein LOC100254083	-	3e-9	At4g34588	CPuORF2 (Conserved peptide upstream open reading frame 2)	C.G.	S.X.	Please select
0.02	6e-3	40	1614048_at	CF514124	hypothetical protein LOC100267928	-	1e-45	At3g12860	nucleolar protein Nop56, putative	C.G.	S.X.	Please select
0.03	2e-2	38	1610866_a_at	CB971085	hypothetical protein LOC100247183	-	1e-6	At1g22300	GRF10 (GENERAL REGULATORY FACTOR 10)	C.G.	S.X.	Please select
0.02	2e-2	38	1607846_at	CF208499	-	-	2e-10	At2g42610	LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)	C.G.	S.X.	Please select
0.02	9e-2	36	1622639_at	CA810871	hypothetical protein LOC100254126	-	1e-4	At1g20440	COR47 (COLD-REGULATED 47)	C.G.	S.X.	Please select
0.02	9e-2	36	1622381_s_at	BQ800211	-	-	2e+0	At2g31180	MYB14 (MYB DOMAIN PROTEIN 14)	C.G.	S.X.	Please select
0.02	9e-2	36	1620275_x_at	CF204388.1	-	-	1e-4	At5g66400	RAB18 (RESPONSIVE TO ABA 18)	C.G.	S.X.	Please select
0.02	9e-2	36	1617303_at	CF204388.1	-	-	1e-4	At5g66400	RAB18 (RESPONSIVE TO ABA 18)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At3g10980	820269	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PFB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.15	2e-15	83	Glycine max	Gma.7038.1.S1_at	CA799116	-	-	7e-2	At3g24050	GATA transcription factor 1 (GATA-1)	C.G.	S.X.	Please select
0.04	3e-3	42	Hordeum vulgare	rbah59d21_at	rbah59d21	-	-	2e-45	Atmg00220	-	C.G.	S.X.	Please select
0.04	4e-2	40	Oryza sativa	OsAffx.19318.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	5e-10	65	Populus trichocarpa	PtpAffx.161413.1.S1_at	CK117480	hypothetical protein	-	8e-4	At4g17060	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e-2	40	Triticum aestivum	TaAffx.110311.1.S1_at	CA660614	-	-	2e-1	At3g46613	RTFL4 (ROTUNDIFOLIA LIKE 4)	C.G.	S.X.	Please select
0.04	4e-2	38	Zea mays	Zm.7010.3.S1_at	AI691447	-	-	5e-2	At2g32100	OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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